View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_46 (Length: 441)
Name: NF1740_high_46
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 222 - 425
Target Start/End: Original strand, 53118593 - 53118796
Alignment:
| Q |
222 |
tcttatactcttattattcaacaaatgataataatttacactaactcttttctttgtgtgtacaatcagatcaaatgagtgtggtcacgtattcacatta |
321 |
Q |
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| T |
53118593 |
tcttatactcttattattcaacaaatgataataatttacactaactcttttctttgtgtgtacaatcagatcaaatgagtgtggtcacgtattcacatta |
53118692 |
T |
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| Q |
322 |
tgaatgtagacaacgggatcaggatccaatagctcgtattttcctttccttcgcagaacaaacataggaagacgtttgcattttcattcatgttatgctc |
421 |
Q |
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| T |
53118693 |
tgaatgtagacaacgggatcatgatccaatagctcgtattttcctttccttcgcagaacaaacataggaagacgtttgcattttcattcatgttatgctc |
53118792 |
T |
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| Q |
422 |
tttt |
425 |
Q |
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|||| |
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| T |
53118793 |
tttt |
53118796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 53118380 - 53118499
Alignment:
| Q |
13 |
attcttaagtttgtatagtgtaaaatagaaattgacgtactgattgatagaaaattatatatttataaaatggcataaacatgctattaaatacgtcaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53118380 |
attcttaagtttgtatagtgtaaaatagaaattgacgtactgattgatagaaaattatatatttataaaatggcataaacatgctattaaatacgtcaat |
53118479 |
T |
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| Q |
113 |
t-aatatattataccgaaac |
131 |
Q |
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| T |
53118480 |
taaatatattataccgaaac |
53118499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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