View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_high_51 (Length: 427)
Name: NF1740_high_51
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 38522479 - 38522876
Alignment:
| Q |
14 |
gaagcacatgatgtttggtttggattataattatcctcaaaaatagacaaaattagcggagattattgagttagaagaaactaaaagtgaaaccgacggt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38522479 |
gaagcacatgatgtttggtttggattataattatcctcaaaaatagacaaaattagcggagattattgagttagaagaaactaaaagtgaaaccgacggt |
38522578 |
T |
|
| Q |
114 |
gtggaaaatttgtactgaatgaagaaggactttattgctatgtcccacctctttatttgtttcactctttgtttggtcagacagtggaacatagttcaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38522579 |
gtggaaaatttgtactgaatgaagaaggactttattgctatgtcccacctctttatttgtttcactctttgtttggtcagacagtggaacatagttcaat |
38522678 |
T |
|
| Q |
214 |
cccgtgtttcactcaatctattgggatatgtattcattttaaattaacagaggatcgttaaagattaaaaattaaaatgatgaatgtgtcgacaatctta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38522679 |
cccgtgtttcactcaatctattgggatatgtattcattttaaattaacagaggatcgttaaagattaaaaattaaaatggtgaatgtgtcgacaatctta |
38522778 |
T |
|
| Q |
314 |
caatcttttttgtagggaacaatcaatctttaaaaaatataaaatacctataaataatttaaccaattcaatagcg-----cgcttagatgagatagcat |
408 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38522779 |
caatc-tttttgttgggaacaatcaatc-ttaaaaaatataaaatacctataaataatttaaccaattcaatagcgcttaccgcttagatgagatagcat |
38522876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University