View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_58 (Length: 381)
Name: NF1740_high_58
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 4502032 - 4502403
Alignment:
| Q |
1 |
tatgattaattcagtgattaaggccacattaatgtgagatttttgtactattattgaattgtcgagtttcttagtccaagggatttggccactttcgttt |
100 |
Q |
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|||||||||||||||||| ||| ||||||||| ||||||||| |||| |||||||||||| | ||| |||||||||||||||||||||||||| ||||| |
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| T |
4502032 |
tatgattaattcagtgataaagaccacattaaattgagattttcgtaccattattgaattggcaagtgtcttagtccaagggatttggccacttccgttt |
4502131 |
T |
|
| Q |
101 |
gattgaattgatcactatctgaaagttcaatctagttgaatgtgaattttcctctaatcgctttcccacctaattccagtacctcaatttctatcatata |
200 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4502132 |
gattgaattgatcactatccgaaagttcaatctagatgaatgtgatttttcctctaatcgctttcccacccaattccagtacctcaatttctatcatata |
4502231 |
T |
|
| Q |
201 |
gtttttctttgttgttcactctttcaatgataaattcttcnnnnnnnngaaa------agactctttcaacgataatgaaacctacccgaattatttaag |
294 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
4502232 |
gtttttctttgttgttgactctttcaatgataaattcttcaaaaaaaaaaaaaaaaagagactctttcaatgataatgaaacctgcccgaattatttaag |
4502331 |
T |
|
| Q |
295 |
actttgcttttgtttttggattgagtacaaattcgtgctcaagtgtggttgctttcttttcatgactttttt |
366 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4502332 |
actttgcttttatttttggattgagtacaaattcgtgctcaagtgtggttgctttcttttcatgactttttt |
4502403 |
T |
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