View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_high_6 (Length: 706)

Name: NF1740_high_6
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_high_6
NF1740_high_6
[»] chr1 (4 HSPs)
chr1 (1-369)||(22894567-22894935)
chr1 (447-634)||(22894351-22894538)
chr1 (131-268)||(15974270-15974404)
chr1 (131-271)||(15975524-15975658)
[»] chr3 (6 HSPs)
chr3 (5-285)||(2431375-2431652)
chr3 (447-622)||(2432649-2432824)
chr3 (132-300)||(14539457-14539623)
chr3 (281-369)||(2432520-2432609)
chr3 (197-270)||(3873512-3873581)
chr3 (528-634)||(14539819-14539925)
[»] chr8 (6 HSPs)
chr8 (447-634)||(16296587-16296774)
chr8 (447-634)||(16304289-16304476)
chr8 (1-147)||(16297302-16297448)
chr8 (1-147)||(16305004-16305150)
chr8 (272-371)||(16296851-16296950)
chr8 (272-371)||(16304553-16304652)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 22894935 - 22894567
Alignment:
Q  1 gctccatttgaattaacttcatattgaacaatgcattatataatgcataatgctgctacagctgatactagagacttttattttccatttggatgattgt 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  22894935 gctccatttgaattaacttgatattgaacaatgcattatataatgcataatgctgctacagctgatactaaagacttttattttccatctggatgattgt 22894836  T
Q  101 tctatttaaatctttacaatgatttgcaatgttatttatgcatctcctatccttctttatatgtattgtgtgttgaattgataattctaacttgttagtt 200  Q
     ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  22894835 actatttaaatctttacaatgggctgcaatgttatttatgcatctcctatccttctttatatgtattgtgtgttgtattgataattttaacttgttagtt 22894736  T
Q  201 ttaatctagtacaaatttaaatgtcattgttgtttgtgtttgataatttgaaagatggtcaacaattgatcctctttgttttaaatatctatttcaaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22894735 ttaatctagtacaaatttaaatgtcattgttgtttgtgtttgataatttgaaagatggtcaacaattgatcctctttgttttaaatatctagttcaaatt 22894636  T
Q  301 cttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcagatggcctcatttttat 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894635 cttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcagatggcctcatttttat 22894567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 447 - 634
Target Start/End: Complemental strand, 22894538 - 22894351
Alignment:
Q  447 attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac 546  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22894538 attcaattgggctttcaaaatcatgttgggccagataaggtccaacccgtatatatctgcccggtaacccgcacaacccggtaacccgaacccgaactac 22894439  T
Q  547 ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaccccgcccga 634  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22894438 ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 22894351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 15974404 - 15974270
Alignment:
Q  131 gttatttatgcatctcctatccttctttatatgtattgtgtgttgaattgataattctaacttgttagttttaatctagtacaaatttaaatgtcattgt 230  Q
    ||||||||||||||| ||||||| | | |||||||||||||| | |  |||||||| |||| || | |||| ||||||||| |||||||||||||||||     
T  15974404 gttatttatgcatcttctatcctacatcatatgtattgtgtggtaa--tgataattttaacgtgctcgtttaaatctagtataaatttaaatgtcattg- 15974308  T
Q  231 tgtttgtgtttgataatttgaaagatggtcaacaattg 268  Q
    |  || |||||||| ||||||||| ||||||| |||||    
T  15974307 taattatgtttgatgatttgaaagttggtcaataattg 15974270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 15975658 - 15975524
Alignment:
Q  131 gttatttatgcatctcctatccttctttatatgtattgtgtgttgaattgataattctaacttgttagttttaatctagtacaaatttaaatgtcattgt 230  Q
    ||||||||||||||| ||||||| | |||| |||| | || |  | | ||| |||| ||||||| ||||||||||||||||||| ||||||||||||||     
T  15975658 gttatttatgcatcttctatcctacattatgtgtactatgcg--gcaatgaaaattttaacttgctagttttaatctagtacaattttaaatgtcattg- 15975562  T
Q  231 tgtttgtgtttgataatttgaaagatggtcaacaattgatc 271  Q
       ||||||||||| ||||||||| ||||||  ||||||||    
T  15975561 ---ttgtgtttgatgatttgaaagttggtcagtaattgatc 15975524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 5 - 285
Target Start/End: Original strand, 2431375 - 2431652
Alignment:
Q  5 catttgaattaacttcatattgaacaatgcattatataatgcataatgctgctacagctgatactagagacttttattttccatttggatgattgttcta 104  Q
    |||||||||||  || |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||| |||    
T  2431375 catttgaattattttgatattgaacaatacattatataatgcataatgctgctacatctgatactatagacttttattttccatctggatgactgtacta 2431474  T
Q  105 -tttaaatctttacaatgatttgcaatgttatttatgcatctcctatccttctttatatgtattgtgtgttgaattgataattctaacttgttagtttta 203  Q
     ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  2431475 atttaaatctttacaatggtctgcaatgttatttatgcatctcctatccttctttatatgtattgtgtgttgtattgataattttaacttgttagtttta 2431574  T
Q  204 atctagtacaaatttaaatgtcattgttgtttgtgtttgataatttgaaagatggtcaacaattgatcctctttgttttaaa 285  Q
    ||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2431575 atctagtacaaatttaaatgtcattg----ttgtgtttgataatttgaaagatggtcaacaattgatcctctttgtcttaaa 2431652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 447 - 622
Target Start/End: Original strand, 2432649 - 2432824
Alignment:
Q  447 attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac 546  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||  ||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  2432649 attcaattgggctttcaatatcatgttgggccagataaggtccaacatgtaaatatccgcccggtaacccgcgcaacccggtaacccgaacccgaactac 2432748  T
Q  547 ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggccc 622  Q
    | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  2432749 ctgcttactagttttggccacaattgggccagaggtttgaacccttcgggttgggatgagcttccactttgggccc 2432824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 132 - 300
Target Start/End: Original strand, 14539457 - 14539623
Alignment:
Q  132 ttatttatgcatctcctatccttctttatatgtattgtgtgttgaattgataattctaacttgttagttttaatctagtacaaatttaaatgtcattgtt 231  Q
    |||||||||||||||||||||  | |||| |||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| ||||||      
T  14539457 ttatttatgcatctcctatccaacattatgtgtattgtgtgtggtattgataattttaacttgttagttttaatctagtacaaatttaaatctcattg-- 14539554  T
Q  232 gtttgtgtttgataatttgaaagatggtcaacaattgatcctcttt--gttttaaatatctatttcaaatt 300  Q
      ||||||||||||||||||||| |||| ||||||||||||| |||  |||||||||||||| ||| ||||    
T  14539555 --ttgtgtttgataatttgaaagttggtaaacaattgatcctgttttagttttaaatatctagttcgaatt 14539623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 2432520 - 2432609
Alignment:
Q  281 ttaaatatctatttcaaattcttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcaga-tggcctcatttttat 369  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  2432520 ttaaatatctagttcaaattcttaatttcacataataagttaaaaatccagcaaatctatataaacgtggcagagaggcctcatttttat 2432609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 3873581 - 3873512
Alignment:
Q  197 agttttaatctagtacaaatttaaatgtcattgttgtttgtgtttgataatttgaaagatggtcaacaattgat 270  Q
    ||||||||||||||| |||||||||| ||||||    || |||||||||||||||||| |  ||||||||||||    
T  3873581 agttttaatctagtataaatttaaatttcattg----ttatgtttgataatttgaaagttaatcaacaattgat 3873512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 634
Target Start/End: Original strand, 14539819 - 14539925
Alignment:
Q  528 taacccgaacccgaactaccc-gcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgacc 626  Q
    |||||||||| |||||||||| ||  || ||||||||||||||||| || |||||| || |||  | |||||||  |||| |||||||||||| |||| |    
T  14539819 taacccgaactcgaactaccccgcacaccagttttgggcacaattgtgcaagatgtctggacctgt-gggttggactgggttgccactttgggtccgaac 14539917  T
Q  627 ccgcccga 634  Q
    ||||||||    
T  14539918 ccgcccga 14539925  T

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Target: chr8 (Bit Score: 160; Significance: 7e-85; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 447 - 634
Target Start/End: Complemental strand, 16296774 - 16296587
Alignment:
Q  447 attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac 546  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  16296774 attcaattgggctttcaaaatcatattgggccagataaggtccaacccgtatatatccgcccgttaacccgcacaacccgataacccgaacccgaactac 16296675  T
Q  547 ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaccccgcccga 634  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16296674 ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 16296587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 447 - 634
Target Start/End: Complemental strand, 16304476 - 16304289
Alignment:
Q  447 attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac 546  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  16304476 attcaattgggctttcaaaatcatattgggccagataaggtccaacccgtatatatccgcccgttaacccgcacaacccgataacccgaacccgaactac 16304377  T
Q  547 ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaccccgcccga 634  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16304376 ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 16304289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 16297448 - 16297302
Alignment:
Q  1 gctccatttgaattaacttcatattgaacaatgcattatataatgcataatgctgctacagctgatactagagacttttattttccatttggatgattgt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  16297448 gctccatttgaattaacttgatattgaacaatgcattatataatgcaaaatgctgctacagctgatactaaagacttttattttccatctggatgattgt 16297349  T
Q  101 tctatttaaatctttacaatgatttgcaatgttatttatgcatctcc 147  Q
     |||||||||||||||||||| | ||||| |||||||||||||||||    
T  16297348 actatttaaatctttacaatggtgtgcaaggttatttatgcatctcc 16297302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 16305150 - 16305004
Alignment:
Q  1 gctccatttgaattaacttcatattgaacaatgcattatataatgcataatgctgctacagctgatactagagacttttattttccatttggatgattgt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  16305150 gctccatttgaattaacttgatattgaacaatgcattatataatgcaaaatgctgctacagctgatactaaagacttttattttccatctggatgattgt 16305051  T
Q  101 tctatttaaatctttacaatgatttgcaatgttatttatgcatctcc 147  Q
     |||||||||||||||||||| | ||||| |||||||||||||||||    
T  16305050 actatttaaatctttacaatggtgtgcaaggttatttatgcatctcc 16305004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 272 - 371
Target Start/End: Complemental strand, 16296950 - 16296851
Alignment:
Q  272 ctctttgttttaaatatctatttcaaattcttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcagatggcctcatttttattt 371  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  16296950 ctctttgttttaaatatctagttcaaattcttaatttcacattataagttaaaaatccaacaaatctatataaacgtggcagatgacctcatttttattt 16296851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 272 - 371
Target Start/End: Complemental strand, 16304652 - 16304553
Alignment:
Q  272 ctctttgttttaaatatctatttcaaattcttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcagatggcctcatttttattt 371  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  16304652 ctctttgttttaaatatctagttcaaattcttaatttcacattataagttaaaaatccaacaaatctatataaacgtggcagatgacctcatttttattt 16304553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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