View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_high_7 (Length: 701)

Name: NF1740_high_7
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_high_7
NF1740_high_7
[»] chr4 (1 HSPs)
chr4 (17-684)||(26480722-26481387)


Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 17 - 684
Target Start/End: Complemental strand, 26481387 - 26480722
Alignment:
Q  17 cataggttaggaattgacatcatatttagttgctaaacatgacattgannnnnnnnnngttataattagttatttgtcattctaatgacacatacctttc 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  26481387 cataggttaggaattgacatcatatttagctgctaaacatgacattgattttttttt-gttataattagttatttgtcattctaatgacacatacctttc 26481289  T
Q  117 ttataggtaaaatttgatcatgttgtaagatggtgctttgcaaacttgcaagagggcacttcatttaatatcgattcagctaagatcttacaatgaccta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26481288 ttataggtaaaatttgatcatgttgtaagatggtgctttgcaaacttgcaagagggcacttcatttaatatcaattcagctaagatcttacaatgaccta 26481189  T
Q  217 gttttgaatcctgatggataaatcaagtgtacttttatcggtgttttttgagcgttgaagttgtatacgagcatggttagtcttcgagacctaactcaca 316  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||    
T  26481188 gttttgaatcctgatggataaatcaagtgtacttttgtcggtgttttttgagcgttgaagttgtatacgaacatggttagtcttcgagacctaacacgca 26481089  T
Q  317 tggatttttatttatcaaatttttgtttt-gcaagagggcacactctctctttcatttctatttctatgtagccacttgacattaacattattcattagt 415  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26481088 tggattttcatttatcaaatttttgtttttgcaagagggcacactctct--ttcatttctatttctatgtagccacttgacattaacattattcattagt 26480991  T
Q  416 ctaaatcaagctttgcttgcaaatttattctctcattttaagcttgaagcaatattgtaaggtaaggggcaaccagattaatatttcaaactttgtagga 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26480990 ctaaatcaagctttgcttgcaaatttattctctcattttaagcttgaagcaatattgtaaggtaaggggcaaccaaattaatatttcaaactttgtagga 26480891  T
Q  516 acaaatccagagaggatgagggcaacttccattattatcacatatggaccctctctcacctacaccctccctctccaactttattttttgttcaagagtc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26480890 acaaatccagagaggatgagggcaacttccattattatcacatatggaccctctctcacctacaccctccctctccaactttattttttgttcaagagtc 26480791  T
Q  616 tctctataggtccccgttattttctatatatgttactagttgcatacacttaaaaatgaccctatacca 684  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26480790 tctctataggtccccattattttctatatatgttactagttgcatacacttaaaaatgaccctatacca 26480722  T

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