View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_70 (Length: 358)
Name: NF1740_high_70
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 48682396 - 48682066
Alignment:
| Q |
13 |
atatagatgagaggtcaaccctctttaaagtaagaattataacaaaaggaatggaattagatagcctagtgaaacaactaaacacctctagagcaaaaga |
112 |
Q |
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| T |
48682396 |
atatagatgagaggtcaaccctctttaaagtaagaattataacaaaaggaatggaattagatagcctagtgaaacaactaaacacctctagagcaaaaga |
48682297 |
T |
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| Q |
113 |
cttgatgaacccaaaaaacaaacactgtgttgtgaatgatggtgtctctgttggtcaaaatttatcaaaaaatggcaaagttgttgatgctcaacatgca |
212 |
Q |
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| T |
48682296 |
cttgatgaacccaaaaaaccaacactgtgttgtgaatgatggtgtctctgttggtcaaaatttatcaaaaattggcaaagttgttgatgctcaacatgca |
48682197 |
T |
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| Q |
213 |
caaaaacgatccacacaaccccaagagtataaaaaacaggttagaaggagactccacactgttaaaccttatcaagaaaggctactgaatatggcagagg |
312 |
Q |
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| T |
48682196 |
caaaaacgatccacacaaccccaagagtataaaaaacaggttagaaggagactccacactgttaaaccttatcaagaaaggctactgaatatggcagagg |
48682097 |
T |
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| Q |
313 |
caaggagagagattgtcaccgccttgaaatt |
343 |
Q |
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| T |
48682096 |
caaggagagagattgtcaccgccttgaaatt |
48682066 |
T |
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