View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_high_71 (Length: 357)

Name: NF1740_high_71
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_high_71
NF1740_high_71
[»] chr4 (5 HSPs)
chr4 (206-341)||(326006-326141)
chr4 (224-293)||(1096083-1096152)
chr4 (225-319)||(1096259-1096351)
chr4 (223-325)||(326523-326623)
chr4 (158-205)||(325937-325984)
[»] chr6 (3 HSPs)
chr6 (221-280)||(499031-499090)
chr6 (248-297)||(498854-498903)
chr6 (248-319)||(498211-498280)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 206 - 341
Target Start/End: Original strand, 326006 - 326141
Alignment:
Q  206 aaccagcaacaacaaaacaacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggacg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  326006 aaccagcaacaacaaaacaacatgagaaattgtgtttgttttctcagcaccatcaccaccaagattcttcttcttgttgtctactactactacttggacg 326105  T
Q  306 gagcctttgttgttcttcttatacattactctttcg 341  Q
    |||||||||||||||||||||||  |||||||||||    
T  326106 gagcctttgttgttcttcttatatgttactctttcg 326141  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 1096083 - 1096152
Alignment:
Q  224 aacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactact 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1096083 aacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttcttgtctactact 1096152  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 225 - 319
Target Start/End: Complemental strand, 1096351 - 1096259
Alignment:
Q  225 acatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggac-ggagcctttgttgtt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||   |||| |||||||||||||||    
T  1096351 acatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttcttgtctactacttcta---ggacgggagcctttgttgtt 1096259  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 326623 - 326523
Alignment:
Q  223 caacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggac-ggagcctttgttgttct 321  Q
    |||||||||||||||||| | ||||||||||||| ||||||| || ||  |||||||| |||||||||||| ||||| |||| |||||||||||||||||    
T  326623 caacatgagaaattgtgtctattttctcagcaccatcaccactaacat--ttcttcttcttgtctactact-ctactaggacaggagcctttgttgttct 326527  T
Q  322 tctt 325  Q
    ||||    
T  326526 tctt 326523  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 325937 - 325984
Alignment:
Q  158 catccaaaaattaaagcatttgattttgattcatctgtttttcttttc 205  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  325937 catccaaaaattaaagcatttgattttgatgaatctgtttttcttttc 325984  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 499090 - 499031
Alignment:
Q  221 aacaacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttctt 280  Q
    ||||| ||||||||||||| |||| |||||| |||||||||||| |||||||||||||||    
T  499090 aacaaaatgagaaattgtgattgtattctcaacaccgtcaccacaaagattcttcttctt 499031  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 498903 - 498854
Alignment:
Q  248 ctcagcaccgtcaccaccaagattcttcttcttgttgtctactactacta 297  Q
    |||||||||||||| || ||||||||||||||| |||| |||||||||||    
T  498903 ctcagcaccgtcacaacaaagattcttcttcttcttgtttactactacta 498854  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 498211 - 498280
Alignment:
Q  248 ctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggac-ggagcctttgttgtt 319  Q
    ||||||||||||||||| |||||  ||||| ||||||| |||||||||||   |||| |||||||||||||||    
T  498211 ctcagcaccgtcaccacaaagatgtttcttgttgttgtttactactacta---ggacgggagcctttgttgtt 498280  T

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