View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_78 (Length: 342)
Name: NF1740_high_78
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 6708874 - 6709162
Alignment:
| Q |
19 |
atcaaagacaataattagcggctaattaagttgtagcttcttttccttnnnnnnnnnnnnnnnnctgtagcttctttatcatgaactcttctcaaaaaat |
118 |
Q |
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| T |
6708874 |
atcaaagacaataattagcggctaattaagttgtagcttcttttccttcaaaaaaaaaaaaaaactgtagcttctttatcatgaactcttctcaaaaaat |
6708973 |
T |
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| Q |
119 |
aatctgcttaattaaagttttcgtcctctatttttcacttacgaatttggtcctccattttaaaattgtaatgttttggttcctttttcagannnnnnng |
218 |
Q |
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| T |
6708974 |
aatctacttaat--aagttttcgtcctctatttttcacttacgaatttggtcctccattttaaaattgtaatgttttggttcctttttcagattttttta |
6709071 |
T |
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| Q |
219 |
atcttaaaaaggatgatttatcatactttagttgaagtttttactaagttttcatgtaatttcatggttattgagtgtatatcacatcatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
6709072 |
atcttaaaaaggatgatttatcatactttagttgaagtttttactaagttttcatgtaatttcatggttattgattgcatatcacatcatt |
6709162 |
T |
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