View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_79 (Length: 342)
Name: NF1740_high_79
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_79 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 53128562 - 53128239
Alignment:
| Q |
17 |
aagtaggacaggagagcttagcattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgct---------gct |
107 |
Q |
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| T |
53128562 |
aagtaggacaggagagcttagtattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgcttctgctgctgct |
53128463 |
T |
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| Q |
108 |
gccaataatgcaaatttgatggtgaacataatttctcttggtgcttgatgctagttgatacttgatattcatacatagtgacatctttatttcattattt |
207 |
Q |
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| T |
53128462 |
gccaataatgcaaatttgatggtgaacataatttctcttggtgcttgatgctagttgatacttgatattcatacatagtgacatctttatttcattattt |
53128363 |
T |
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| Q |
208 |
atctgtagggaaatcaatgggtaccaggaagtaccaggaatcctgaaacatatattttgaaggatcaggtattattagtacgaaaagtacttcgatattt |
307 |
Q |
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| T |
53128362 |
atctgtagggaaatcaatgggtaccaggaagtaccaggaatcctgaaacatatattttgaaggatcaggtattattagtacgaaaagtactttgatattt |
53128263 |
T |
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| Q |
308 |
tctttcattgcttttgtgccctat |
331 |
Q |
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| T |
53128262 |
tctttcattgcttttgtgccctat |
53128239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 53110961 - 53110658
Alignment:
| Q |
17 |
aagtaggacaggagagcttagcattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgctgctgcc------ |
110 |
Q |
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| T |
53110961 |
aagtaagacaggagagcttagcattttccccaagacttttatagtgctgtctcattgtctgcacttgatgcccaaccaaaagtctgctgctgctgctgct |
53110862 |
T |
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| Q |
111 |
---aataatgcaaatttgatggtgaacataatttctcttggtgcttgatgctagttgatacttgatattcatacatagtgacatctttatttcattattt |
207 |
Q |
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| T |
53110861 |
gcaaataatgcaaatttgatggtgaacataatttctcttggtgtttgatactagttgatacttgacattcatacatagtgacatccttatttcattattt |
53110762 |
T |
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| Q |
208 |
atctgtagggaaatcaatgggtaccaggaagtaccaggaatcctgaaacatatattttgaaggatcaggtattattagtacgaaaagtacttcgatattt |
307 |
Q |
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| T |
53110761 |
atctgtagggaaatcaatgggtaccaggaagtgccaggagccctgaaaaatacattttaaaggatcaggtgttattagtcttgaatgtacttggatattt |
53110662 |
T |
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| Q |
308 |
tctt |
311 |
Q |
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|||| |
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| T |
53110661 |
tctt |
53110658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 26 - 324
Target Start/End: Complemental strand, 53116337 - 53116046
Alignment:
| Q |
26 |
aggagagcttagcattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtct---------gctgctgccaataat |
116 |
Q |
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|||||| ||||| |||||||| ||||| || |||||||||||||||||||||| |||||||| | ||| ||||| ||||||||||||||| |
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| T |
53116337 |
aggagatcttagtattttcccgaagacctttacagttctgtctcattgtctgcacttgatgcccgatcaaaagtctactgctgctgctgctgccaataat |
53116238 |
T |
|
| Q |
117 |
gcaaatttgatggtgaacataatttctcttggtgcttgatgctagttgatacttgatattcatacatagtgacatctttatttcattatttatctgtagg |
216 |
Q |
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| T |
53116237 |
gcaaatttgatggtgaacataatttcttttggtgtttgatactactt------tgatattcatacatagtgacatccttatttcattatttatctgtaga |
53116144 |
T |
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| Q |
217 |
gaaatcaatgggtaccaggaagtaccaggaatcctgaaacatatattttgaaggatcaggtattattagtacgaaaagtacttcgatattttctttcatt |
316 |
Q |
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|||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |
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| T |
53116143 |
gaaatccgtgggtacca----------ggaatcctgaaacatacattttaaaggatcaggtattattagtgtgaaaagtactttgatgatttctttcatg |
53116054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 15838190 - 15838272
Alignment:
| Q |
27 |
ggagagcttagcattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgctgctgc |
109 |
Q |
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||||||||||| ||||||||||| ||| |||| || ||||||||||||||||| |||||||| | ||| | ||||||||||| |
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| T |
15838190 |
ggagagcttagtattttccccaaaacttttgtggtgctgtctcattgtctgcatatgatgcctaggcaaaaatctgctgctgc |
15838272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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