View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_84 (Length: 339)
Name: NF1740_high_84
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_84 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 9214463 - 9214146
Alignment:
| Q |
17 |
accaatgtggcactattccacctcaccattatttgtacccaaaatgtaacactcttgctagcttccccatataaatacaagtaaacccctccactccact |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9214463 |
accaatgtggcactattccacctcaccattatttgtacccaaaatgtaacactcttgcttgcttccccatataaatacaagtaaacccctccactccact |
9214364 |
T |
|
| Q |
117 |
tatgctcataattcttcaatcctatttacacactctttgttacactaaaaagacttttcaacctttatcgaattagagagagaga----aacnnnnnnnc |
212 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |
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| T |
9214363 |
tatactcataattcttcaatcctatttacacactctttgttacactaaaaagacttttcaacctttatcaaattagagagagagagagaaacaaaaaaac |
9214264 |
T |
|
| Q |
213 |
actattcatccgtacaacataaaaatttccacttttacactattaatcaatttcaacctcttgtttccttttctccaacttctccaatctcatcaatcat |
312 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9214263 |
actattcatccgtacaacataaat-tttccacttttacactattaatcaatttcaacctcttgtttccttttctccaacttctccaatctcatcaatcat |
9214165 |
T |
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| Q |
313 |
ctctttattctctacctat |
331 |
Q |
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||||||||||||||||||| |
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| T |
9214164 |
ctctttattctctacctat |
9214146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 9193818 - 9193864
Alignment:
| Q |
216 |
attcatccgtacaacataaaaatttccacttttacactattaatcaa |
262 |
Q |
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||||||||||||||||| |||| |||||||||||| ||||||||||| |
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| T |
9193818 |
attcatccgtacaacattaaaacttccacttttactctattaatcaa |
9193864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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