View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_85 (Length: 337)
Name: NF1740_high_85
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_85 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 42223763 - 42224073
Alignment:
| Q |
11 |
caaaggacaacagcaatggtcattcattagctttacgtctatttcatcaatatgtcgaggnnnnnnnnnnnnnnnnnnnnggatttagcttgtttacagt |
110 |
Q |
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| T |
42223763 |
caaagaacaacaacaatggtcattcattagctttacgtctatttcatcaatatgtcgaggaaaaaggaaaaaaagcaaaaggatttagtttgtttacagt |
42223862 |
T |
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| Q |
111 |
gatgaatttgtcgaaagggaggagagagtaagttgtccaagccacaccatttccaaaggaagcaagagatatggagagcggcatgtactcaatgctttta |
210 |
Q |
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| T |
42223863 |
gatgaatttgtcgaaagggaggagagagtaagttgtccaagccacaccatttccaaaggaagcaagagatatggagagcggcatgtactcaatgctttta |
42223962 |
T |
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| Q |
211 |
gtcatgatcaccagtttctgcaaagcaatagtaaattttatcaaatacttcaaattcaataaaaacgcttccaaacaaaaaattaagattaagtgtttgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
42223963 |
gtcatgatcaccagtttctgcaaagcaatagtaaattttatcaaatacttcaaattcaataaaaacgcatccaaaccaaaaattaagattaagtgtttgt |
42224062 |
T |
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| Q |
311 |
ttgatgattac |
321 |
Q |
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||||||||||| |
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| T |
42224063 |
ttgatgattac |
42224073 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 36675959 - 36675871
Alignment:
| Q |
145 |
gtccaagccacaccatttccaaaggaagcaagagatatggagagcggcatgtactcaatgcttttagtcatgatcaccagtttctgcaa |
233 |
Q |
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| T |
36675959 |
gtccaagaaacaccattgccaaatgaagctaaagataggaaaaacggcatgaactcaacacttttagtcttgatcactagtttctgcaa |
36675871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 36686041 - 36685953
Alignment:
| Q |
145 |
gtccaagccacaccatttccaaaggaagcaagagatatggagagcggcatgtactcaatgcttttagtcatgatcaccagtttctgcaa |
233 |
Q |
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||||||| |||||||| ||||| ||||| | ||||| | | | ||||||| |||||| ||||||||| ||||||| ||||||||||| |
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| T |
36686041 |
gtccaagaaacaccattgccaaatgaagctaaagataggaaaaacggcatgaactcaacacttttagtcttgatcactagtttctgcaa |
36685953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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