View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_88 (Length: 330)
Name: NF1740_high_88
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_88 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 132 - 326
Target Start/End: Original strand, 46537214 - 46537408
Alignment:
| Q |
132 |
tattaacacacactaacgtgcgcattccacctcatcaatatgtgcgtactgcgccaccctggtaaacaccattgcttctggttattacccaccttcattt |
231 |
Q |
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| T |
46537214 |
tattaacacacactaacgtgcgcattccacctcatcaatatgtgcgtactgcgccaccctggtaaacaccattgcttctggttattacccaccttcattt |
46537313 |
T |
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| Q |
232 |
ttctcttgttctcttcttcttcagccataactcttctcgcaccacaacctagtaagttcaagttcatttcaaacaaaaaccattttcttctcact |
326 |
Q |
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| T |
46537314 |
ttctcttgttctcttcttcttcagccataactcttctcgcaccacaacctagtaagttcaagttcatttcaaacaaaaaccattttcttttcact |
46537408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 46537100 - 46537156
Alignment:
| Q |
18 |
aaacatcacacacgcaacaatctgcaacatttcctgcagtaacatttaataatacca |
74 |
Q |
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| T |
46537100 |
aaacatcacacacgcaacaatctgcaacatttcctgcagtaacatttaataatacca |
46537156 |
T |
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