View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_high_9 (Length: 685)

Name: NF1740_high_9
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_high_9
NF1740_high_9
[»] chr8 (2 HSPs)
chr8 (30-541)||(3427967-3428478)
chr8 (540-669)||(3427815-3427944)
[»] chr5 (8 HSPs)
chr5 (397-539)||(9211459-9211606)
chr5 (397-539)||(9369879-9370026)
chr5 (543-578)||(19242401-19242436)
chr5 (543-585)||(9211389-9211431)
chr5 (543-576)||(12560227-12560260)
chr5 (545-577)||(12556985-12557017)
chr5 (495-539)||(12560154-12560198)
chr5 (495-539)||(19242464-19242508)
[»] chr3 (7 HSPs)
chr3 (543-578)||(20798780-20798815)
chr3 (543-585)||(9450789-9450831)
chr3 (543-585)||(17724638-17724680)
chr3 (543-585)||(19025867-19025909)
chr3 (543-585)||(26640805-26640847)
chr3 (543-585)||(28838401-28838443)
chr3 (543-575)||(28830446-28830478)
[»] chr7 (1 HSPs)
chr7 (543-585)||(19545424-19545466)
[»] chr1 (2 HSPs)
chr1 (543-585)||(1466862-1466904)
chr1 (543-585)||(35923325-35923367)


Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 30 - 541
Target Start/End: Complemental strand, 3428478 - 3427967
Alignment:
Q  30 aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatagagggaaagttaggagat 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3428478 aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatatagggaaagttaggagat 3428379  T
Q  130 caaggagcaaaaacattccttaattggtttctgcaagagctttttgagtaagacatttgaagtttttctacacaaaattagtcatcagtgagaccaagtt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428378 caaggagcaaaaacattccttaattggtttctgcaagagctttttgagtaagacatttgaagtttttctacacaaaattagtcatcagtgagaccaagtt 3428279  T
Q  230 tattcatagcctttgtaacgcatattatcagttcaacaaaaaatagcggattcaacaactgcaatatgattaaacatgctctgtctatttggatctaatg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  3428278 tattcatagcctttgtaacgcatattatcagttcaacaaaaaatatcggattcaacaactgcaatatgattaaacatactttgtctatttggatctaatg 3428179  T
Q  330 gagtagcaaatgtgtgagctagggtatgaactgctgacacttgaatggtgtttagaatgtcataatataagtcccacatcggaagatttgtagtgaataa 429  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  3428178 gagtggcaaatgtgtgagctagggtatgaactgctgacacttgaatggtgtttagaatgtaataataaaagtcccacatcggaagatttatagtgaataa 3428079  T
Q  430 tgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgttgtgatcaagaaggcccatcgtctaggcgtgtgacc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3428078 tgtggagcatgagttataaaatagaagtgtgtgacacattgcagcatacttacctggcaggtgttgtgatcaagaaggcccatcgtctaggcgtgtgacc 3427979  T
Q  530 tccattgcacct 541  Q
    ||||||||||||    
T  3427978 tccattgcacct 3427967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 540 - 669
Target Start/End: Complemental strand, 3427944 - 3427815
Alignment:
Q  540 ctgcccaagtggtggagcttacatcataatttgttgcagtaggggcatgctaatatactgtgctcatcttctccttttgatgcaattgttgaaggttgaa 639  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3427944 ctgcccaagtggtggagtttacatcgtaatttgttgcagtaggggcatgctaatatattgtgctcatcttctccttttgatgcaattgttgaaggttgaa 3427845  T
Q  640 atttgcgggctgattaggttgggtaaatat 669  Q
    ||||||||||||||||||||||||||||||    
T  3427844 atttgcgggctgattaggttgggtaaatat 3427815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 397 - 539
Target Start/End: Complemental strand, 9211606 - 9211459
Alignment:
Q  397 taagtcccacatcggaagatttgtagtgaataatgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgt--- 493  Q
    |||||||||||||||||| ||| ||||||||  | ||||||||||||||||||| |||| ||||||| |||||| |||||||||||||||| || ||       
T  9211606 taagtcccacatcggaagttttatagtgaatgttatggagcatgagttataaaacagaattgtgtgatacattgtaacatacttacctggatggggtcaa 9211507  T
Q  494 --tgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 539  Q
       ||||||| |||||||||| | ||||||  ||||||| ||||||||    
T  9211506 tgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcac 9211459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 397 - 539
Target Start/End: Original strand, 9369879 - 9370026
Alignment:
Q  397 taagtcccacatcggaagatttgtagtgaataatgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgt--- 493  Q
    |||||||||||||||||| ||| ||||||||  | ||||||||||||||||||| |||| |||||||  |||||||||||||||||||||| || ||       
T  9369879 taagtcccacatcggaagttttatagtgaatgttatggagcatgagttataaaagagaattgtgtgattcattgcaacatacttacctggatggggtcaa 9369978  T
Q  494 --tgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 539  Q
       |||||||| ||||||||| | ||||||  ||||||| ||||||||    
T  9369979 tgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcac 9370026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 578
Target Start/End: Complemental strand, 19242436 - 19242401
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcag 578  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19242436 cccaagtggtggagcctacatcataatttgttgcag 19242401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Complemental strand, 9211431 - 9211389
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  9211431 cccaagtggtggagcctacatcataatttgttgctgtgggggc 9211389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 576
Target Start/End: Original strand, 12560227 - 12560260
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgc 576  Q
    ||||||||||||||| ||||||||||||||||||    
T  12560227 cccaagtggtggagcctacatcataatttgttgc 12560260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 545 - 577
Target Start/End: Original strand, 12556985 - 12557017
Alignment:
Q  545 caagtggtggagcttacatcataatttgttgca 577  Q
    ||||||||||||| |||||||||||||||||||    
T  12556985 caagtggtggagcctacatcataatttgttgca 12557017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 12560154 - 12560198
Alignment:
Q  495 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 539  Q
    |||||||||||||||||| | ||||||  ||||||||||||||||    
T  12560154 gtgatcaagaaggcccatggcctaggcaagtgacctccattgcac 12560198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 539
Target Start/End: Complemental strand, 19242508 - 19242464
Alignment:
Q  495 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 539  Q
    |||||||||||||||||| | ||||||  ||||||||||||||||    
T  19242508 gtgatcaagaaggcccatggcctaggcaagtgacctccattgcac 19242464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 578
Target Start/End: Complemental strand, 20798815 - 20798780
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcag 578  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20798815 cccaagtggtggagcctacatcataatttgttgcag 20798780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Original strand, 9450789 - 9450831
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  9450789 cccaagtggtggagcctacatcataatttgttgctgtgggggc 9450831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Original strand, 17724638 - 17724680
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  17724638 cccaagtggtggagcctacatcataatttgttgctgtgggggc 17724680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Original strand, 19025867 - 19025909
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  19025867 cccaagtggtggagcctacatcataatttgttgctgtgggggc 19025909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Original strand, 26640805 - 26640847
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||| | ||||||||||||||||||||| |||||    
T  26640805 cccaagtggtggaacctacatcataatttgttgcagtgggggc 26640847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Complemental strand, 28838443 - 28838401
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  28838443 cccaagtggtggagcctacatcataatttgttgctgtgggggc 28838401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 543 - 575
Target Start/End: Complemental strand, 28830478 - 28830446
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttg 575  Q
    ||||||||||||||| |||||||||||||||||    
T  28830478 cccaagtggtggagcctacatcataatttgttg 28830446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Complemental strand, 19545466 - 19545424
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  19545466 cccaagtggtggagcctacatcataatttgttgctgtgggggc 19545424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Original strand, 1466862 - 1466904
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  1466862 cccaagtggtggagcctacatcataatttgttgctgtgggggc 1466904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 585
Target Start/End: Original strand, 35923325 - 35923367
Alignment:
Q  543 cccaagtggtggagcttacatcataatttgttgcagtaggggc 585  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  35923325 cccaagtggtggagcctacatcataatttgttgctgtgggggc 35923367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University