View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_high_90 (Length: 324)

Name: NF1740_high_90
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_high_90
NF1740_high_90
[»] chr6 (2 HSPs)
chr6 (170-256)||(12233037-12233123)
chr6 (274-309)||(12233015-12233050)
[»] scaffold0449 (1 HSPs)
scaffold0449 (1-38)||(7542-7579)
[»] chr8 (1 HSPs)
chr8 (1-46)||(7689515-7689560)
[»] chr4 (2 HSPs)
chr4 (1-38)||(13132281-13132318)
chr4 (1-38)||(18667632-18667669)
[»] chr3 (2 HSPs)
chr3 (1-38)||(35996017-35996054)
chr3 (1-37)||(5800946-5800982)
[»] chr2 (2 HSPs)
chr2 (1-38)||(19251470-19251507)
chr2 (1-37)||(23854688-23854724)
[»] chr1 (2 HSPs)
chr1 (1-38)||(17606648-17606685)
chr1 (1-38)||(24467628-24467665)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 12233123 - 12233037
Alignment:
Q  170 tgtcattgaaatatttttgtattaatataatacaagaaaattgtcatgcaagacattggtctatacggacggcaaataggatctatg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12233123 tgtcattgaaatatttttgtattaatataatacaagaaaattgtcatgcaagacattggtctatacggacggcaaataggatctatg 12233037  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 12233050 - 12233015
Alignment:
Q  274 aaataggatctatgtttgtttcacaaatgtcataac 309  Q
    ||||||||||||||||||||||||||||||||||||    
T  12233050 aaataggatctatgtttgtttcacaaatgtcataac 12233015  T

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Target: scaffold0449 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7542 - 7579
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccct 38  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  7542 tcgctaatattacagggacgaaaataggtatttaccct 7579  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7689560 - 7689515
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccctcaattaaa 46  Q
    |||||||||||||||||||||||| | ||||| ||||| |||||||    
T  7689560 tcgctaatattacagggacgaaaagaggtatttaccctaaattaaa 7689515  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13132281 - 13132318
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccct 38  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  13132281 tcgctaatattacagggacgaaaataggtatttaccct 13132318  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18667632 - 18667669
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccct 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  18667632 tcgctaatattacagggacgaaaagaggtattaaccct 18667669  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35996017 - 35996054
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccct 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  35996017 tcgctaatattacagggacgaaaagatgtatttaccct 35996054  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5800946 - 5800982
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccc 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  5800946 tcgctaatattacagggacgaaaagaggtattaaccc 5800982  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19251507 - 19251470
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccct 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  19251507 tcgctaatattacagggacgaaaagaggtattaaccct 19251470  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23854724 - 23854688
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccc 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  23854724 tcgctaatattacagggacgaaaagaggtattaaccc 23854688  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17606648 - 17606685
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccct 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  17606648 tcgctaatattacagggacgaaaagaggtattaaccct 17606685  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24467665 - 24467628
Alignment:
Q  1 tcgctaatattacagggacgaaaatatgtattaaccct 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  24467665 tcgctaatattacagggacgaaaagatgtatttaccct 24467628  T

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