View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_91 (Length: 318)
Name: NF1740_high_91
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_91 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 49066060 - 49065757
Alignment:
| Q |
1 |
atttcacaacatttcaagtgatgaacgtagcacatcttagttagcttaccggaatttcaacaagaatttatcaattcaaaaataaca---ttttttacta |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49066060 |
atttcacaacatttcaagtgatgaacgtagcacatcttagttagcttaccggaatttcaacaagaatttatcaattcaaaaataacaacattttttacta |
49065961 |
T |
|
| Q |
98 |
aagnnnnnnnnn-tgggataagggagttcattaacagatcattaagagtcttgaacttcccttaaaaaagtttacacaatatgttaatacaaacaattgg |
196 |
Q |
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||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49065960 |
aagaaaaaaaaaattggataagggagttcattaactgatcattaagagtcttgaacttcccttaaaaaagtttacacaatatgttattacaaacaattgg |
49065861 |
T |
|
| Q |
197 |
aaaataaatttggccaaatgctaactagctatatattaatcaagaagctagttgtgactaatctatattataagagcacatgcttagagctttaaggata |
296 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49065860 |
aaaataaattttgccaaatgctaactagctatatattaatcaagaagctagttgtgactaatctatattataagagcacatgcttagagctttaaggata |
49065761 |
T |
|
| Q |
297 |
agtc |
300 |
Q |
| |
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|||| |
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| T |
49065760 |
agtc |
49065757 |
T |
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