View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_95 (Length: 309)
Name: NF1740_high_95
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_95 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 39 - 291
Target Start/End: Original strand, 39524164 - 39524416
Alignment:
| Q |
39 |
aacctgtgtgctgccctaactacattattcatattagaagaaaattttgcaagaaaactaaacagcaatagcaaaaaatacaactatattatatgataga |
138 |
Q |
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| T |
39524164 |
aacctgtgtgctgccctaactacattattcatattagaagaaaattttgcaagaaaactaaacagcaatagcaaaaaatacaactatattatatgataga |
39524263 |
T |
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| Q |
139 |
ataattcaatgataattttatgcataatgattaaattcatgcaataaacttgtccttcaataccaaaaatttggctattattttgtgagcatattccatt |
238 |
Q |
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| T |
39524264 |
ataattcaatgataattttatgcataatgattaaattcatgcaataaacttgtccttcattaccaaaaatttggctattattttgtgcgcatattccatt |
39524363 |
T |
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| Q |
239 |
ttttcctgataaagtatttactctaatactctattataaccagtattactttt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39524364 |
ttttcctgataaagtatttactctaatactctattataactagtattactttt |
39524416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 23260722 - 23260896
Alignment:
| Q |
39 |
aacctgtgtgctgccctaactacattattcatattagaagaaaattttgcaagaaaactaaacagcaatagcaaaaaatacaactatattatatgataga |
138 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
23260722 |
aacctatgtgctgccctaactacattattcatattaggagaaaattttgcaagaaaactgaa--gcaatagcaaaaaatacaactatattatatgataga |
23260819 |
T |
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| Q |
139 |
ataattcaatgataattttatgcataatgattaaattcatgcaataaacttgtccttcaataccaaaaatttggcta |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||||||| |
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| T |
23260820 |
ataattcaatgataattttatgcataatgattaagttcatgcaataaacttgtccttcagttccaaaattttggcta |
23260896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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