View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_high_97 (Length: 304)
Name: NF1740_high_97
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_high_97 |
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| [»] scaffold1063 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 34 - 286
Target Start/End: Complemental strand, 32226149 - 32225898
Alignment:
| Q |
34 |
aaccaaaaagaagaagcaacgaaattaaactaaaccaacggaagaggtgaaccaaacaaaattgaaaaactaaatcaagacaaacaaacatagagatgaa |
133 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32226149 |
aaccgaaaagaagaagcaacgaaattaaactaaaccaacg-aagaggtgaaccaaacaaaattgaaaaactaaatcaagacaaacaaacatagagatgaa |
32226051 |
T |
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| Q |
134 |
agtttctaaaattgtttaaagttaaaactatcgaaaaggggtaaatttctttaaaattgggtaaaatcaagttagtttctttagagattttgctacgtgc |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
32226050 |
agtttctaaaattgtttaaagttaaaactatcgaaaaggggtaaatttctttaaaattgggtaaaatcaagttagtttctttaaagattttgctacatgc |
32225951 |
T |
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| Q |
234 |
gtcctcgtgtttaactcagttggtagggacaattcataccatatgtaaggtct |
286 |
Q |
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| T |
32225950 |
gtcctcgtgtttaattcaattggtagagataattcataccatatgtaaggtct |
32225898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 33373807 - 33373764
Alignment:
| Q |
244 |
ttaactcagttggtagggacaattcataccatatgtaaggtctg |
287 |
Q |
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| T |
33373807 |
ttaactcagttggtatggacaattcataatatatgtaaggtctg |
33373764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 40187691 - 40187648
Alignment:
| Q |
244 |
ttaactcagttggtagggacaattcataccatatgtaaggtctg |
287 |
Q |
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| T |
40187691 |
ttaactcagttggtagggacaatgcataatatatgtaaggtctg |
40187648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 7464546 - 7464505
Alignment:
| Q |
244 |
ttaactcagttggtagggacaattcataccatatgtaaggtc |
285 |
Q |
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| T |
7464546 |
ttaactcagttggtagggacaatgcataatatatgtaaggtc |
7464505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 42401436 - 42401481
Alignment:
| Q |
242 |
gtttaactcagttggtagggacaattcataccatatgtaaggtctg |
287 |
Q |
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| T |
42401436 |
gtttaactcagttggtagggacaatgcatagtatatgcaaggtctg |
42401481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 33153935 - 33153894
Alignment:
| Q |
244 |
ttaactcagttggtagggacaattcataccatatgtaaggtc |
285 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| |
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| T |
33153935 |
ttaactcagttggtagggacaatgcataatatatgtaaggtc |
33153894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 30678868 - 30678828
Alignment:
| Q |
244 |
ttaactcagttggtagggacaattcataccatatgtaaggt |
284 |
Q |
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| T |
30678868 |
ttaactcagttggtagggacaatgcataatatatgtaaggt |
30678828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 1115 - 1071
Alignment:
| Q |
244 |
ttaactcagttggtagggacaattcataccatatgtaaggtctga |
288 |
Q |
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||||||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
1115 |
ttaactcagttagtagggacaatgcataatatatgtaaggtctga |
1071 |
T |
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