View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_101 (Length: 304)
Name: NF1740_low_101
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 27562394 - 27562234
Alignment:
| Q |
15 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
114 |
Q |
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| T |
27562394 |
gcagagagagccatggttttgtctgtgttgaagaattcaattgaggaagccaaggttttattttttgcgatttctttccttctgtcattcatttgtcgat |
27562295 |
T |
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| Q |
115 |
tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
175 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
27562294 |
tctgtctgagatatatgcttggctgatgtcatagatagtgaattctgatcgtctttctgag |
27562234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 174 - 288
Target Start/End: Complemental strand, 27562186 - 27562072
Alignment:
| Q |
174 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27562186 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
27562087 |
T |
|
| Q |
274 |
ttttcatgtatgttt |
288 |
Q |
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| T |
27562086 |
ttttcatgtatgttt |
27562072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 36669449 - 36669288
Alignment:
| Q |
15 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
114 |
Q |
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| T |
36669449 |
gcagagagagctatgggtttgtctgagttgaagaattcaattgaggaagtgaaggttttattttt-gtgatttctttccttctgtcattcatttgtcgat |
36669351 |
T |
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| Q |
115 |
tct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
175 |
Q |
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||| || | |||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
36669350 |
tctctgtctaagatttatgcttggctgatatcatagatagtgaatgctgatcgtctttctgag |
36669288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 36669239 - 36669127
Alignment:
| Q |
175 |
gaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatct |
274 |
Q |
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| T |
36669239 |
gaacttcaggtttgtaaatttgaactatctgcaatggttttgtcattatttcttcagtaattgagatgcattgactc-agggttccatctaaaagtatct |
36669141 |
T |
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| Q |
275 |
tttcatgtatgttt |
288 |
Q |
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|||||||||||||| |
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| T |
36669140 |
tttcatgtatgttt |
36669127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 26928930 - 26928772
Alignment:
| Q |
15 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
114 |
Q |
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|||||||||||||| |||||| | ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||| |
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| T |
26928930 |
gcagagagagccattactttgtccgacttgaaaaattcaattgaggaagccaaggttttattttttgtgatttctttccttctctcattcatttgtcgat |
26928831 |
T |
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| Q |
115 |
--tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttc |
171 |
Q |
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||||| | |||||||||||| |||||||||| |||||||||||| |||||||||||| |
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| T |
26928830 |
tctctgtctaagatatatgcttggctgatgtcacagatagtgaatgatgatcgtctttc |
26928772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 26928703 - 26928622
Alignment:
| Q |
207 |
aatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgttt |
288 |
Q |
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|||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| ||||| |
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| T |
26928703 |
aatggttttgtcattatttcttgagtaatttagatgcatatactctagggttccatgtaaaagtatatttttatgtgtgttt |
26928622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 29411725 - 29411621
Alignment:
| Q |
174 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
273 |
Q |
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|||||||||||||||| |||||||||||||||||||| | || |||||||||||||||||| ||| | |||| | | |||||||||||||||||||||| |
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| T |
29411725 |
agaacttcaggtttgtcaatttgagctatctgcaatggtgttatcattatttcttgagtaattgaaacacattcattatagggttccatgtaaaagtatc |
29411626 |
T |
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| Q |
274 |
ttttc |
278 |
Q |
| |
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||||| |
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| T |
29411625 |
ttttc |
29411621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 29411938 - 29411773
Alignment:
| Q |
15 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgattt-ctttccttctgtcattcattt--gtc |
111 |
Q |
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||||| || |||||||||||||| | ||||||| | |||||||||||||||| ||||| |||||| ||||| ||||||||| ||||||||| ||| |
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| T |
29411938 |
gcagatagggccatgggtttgtccgagttgaagcactcaattgaggaagccaaggtttaactttttgtgattttctttccttccaccattcatttttgtc |
29411839 |
T |
|
| Q |
112 |
gattct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
175 |
Q |
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|||||| || | |||| |||| || ||||||||||||||| |||||||||||||||||||||||| |
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| T |
29411838 |
gattctttgtctaagatgtatgtttggctgatgtcatagatcgtgaatgctgatcgtctttctgag |
29411773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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