View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_103 (Length: 303)
Name: NF1740_low_103
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 47322517 - 47322228
Alignment:
| Q |
11 |
cacagatcatgtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnnt--------- |
101 |
Q |
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| T |
47322517 |
cacagatcatgtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagaaaaaaaattcttaataa |
47322418 |
T |
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| Q |
102 |
------tacaggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagatt |
195 |
Q |
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| T |
47322417 |
aaaaattacaggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagatt |
47322318 |
T |
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| Q |
196 |
gtgtttcgcttcaacagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagagg |
285 |
Q |
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| T |
47322317 |
gtgtttcgcttcaacagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagagg |
47322228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 47337313 - 47337024
Alignment:
| Q |
11 |
cacagatcatgtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnnt--------- |
101 |
Q |
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| T |
47337313 |
cacagatcatgtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagaaaaaaaattcttaataa |
47337214 |
T |
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| Q |
102 |
------tacaggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagatt |
195 |
Q |
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| T |
47337213 |
aaaaattacaggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagatt |
47337114 |
T |
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| Q |
196 |
gtgtttcgcttcaacagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagagg |
285 |
Q |
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| T |
47337113 |
gtgtttcgcttcaacagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagagg |
47337024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 40337186 - 40337118
Alignment:
| Q |
214 |
ggtggtcggaactca-cgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagagg |
285 |
Q |
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| T |
40337186 |
ggtggtcggaactcagcgcgacggaggagggttgaggaagaaggttg----tgaaggagagatgtggtagagg |
40337118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 24668267 - 24668461
Alignment:
| Q |
19 |
atgtattggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnn-------------ttaca |
105 |
Q |
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| T |
24668267 |
atgtattggtaccttcaacatatatcaaacccataatcatcaattgatccatcatgatctaccaaccattgaagaaaaacaaaatcttaaaaaaattaca |
24668366 |
T |
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| Q |
106 |
ggtgtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
24668367 |
ggtgtgaggtgaagttgaagcaagctctggtattggagcttcgagaaggttgaggagggaaagtaaggaagcttttttgtagtggagattgtgtt |
24668461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 46950950 - 46950850
Alignment:
| Q |
190 |
gagattgtgtttc-gcttc-aacagt--ggtggtcggaactca-cgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagag |
284 |
Q |
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||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
46950950 |
gagattgtgtttccgcttccaacagtacggtggtcggaactcagcgcggcggaggagggttgaggaagaaggttgcacgtcaaggagagatgtggtagag |
46950851 |
T |
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| Q |
285 |
g |
285 |
Q |
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| T |
46950850 |
g |
46950850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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