View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_low_104 (Length: 303)
Name: NF1740_low_104
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_104 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0009 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 24757178 - 24756876
Alignment:
| Q |
1 |
tcaaattaaaaacatgcttgtttggaaataaaatcaatattaaaagattatccttgtcaaaggtacccataaattaaaatgggaggtagatactgatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24757178 |
tcaaattaaaaacatgcttgtttggaaataaaatcaatattaaaagattatccttgtcaaaggtacccataaattaaaatgggaggtagatactgatttg |
24757079 |
T |
|
| Q |
101 |
gctacacgactttactgagtttgcctaaataaaagattggtaattaagagatcctaataagtgacatacatccattagagaaatcaatttcgtcaacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24757078 |
gctacacgactttactgagtttgcctaaataaaagattggtaattaagagatcctaataagtgacatacatccattagagaaatcaatttcgtcaacact |
24756979 |
T |
|
| Q |
201 |
catttcattgagtattagggaaattaattgcaagacctccaatctaaatcaaaggatgaaatgtgaggtaggtgtttaggatcagcaagcaatagtttag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24756978 |
catttcattgagtattagggaaattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaggtaggtgattaggatcagcaagcaatagtttag |
24756879 |
T |
|
| Q |
301 |
gca |
303 |
Q |
| |
|
||| |
|
|
| T |
24756878 |
gca |
24756876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 24766175 - 24765873
Alignment:
| Q |
1 |
tcaaattaaaaacatgcttgtttggaaataaaatcaatattaaaagattatccttgtcaaaggtacccataaattaaaatgggaggtagatactgatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24766175 |
tcaaattaaaaacatgcttgtttggaaataaaatcaatattaaaagattatccttgtcaaaggtacccataaattaaaatgggaggtagatactgatttg |
24766076 |
T |
|
| Q |
101 |
gctacacgactttactgagtttgcctaaataaaagattggtaattaagagatcctaataagtgacatacatccattagagaaatcaatttcgtcaacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24766075 |
gctacacgactttactgagtttgcctaaataaaagattggtaattaagagatcctaataagtgacatacatccattagagaaatcaatttcgtcaacact |
24765976 |
T |
|
| Q |
201 |
catttcattgagtattagggaaattaattgcaagacctccaatctaaatcaaaggatgaaatgtgaggtaggtgtttaggatcagcaagcaatagtttag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24765975 |
catttcattgagtattagggaaattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaggtaggtgattaggatcagcaagcaatagtttag |
24765876 |
T |
|
| Q |
301 |
gca |
303 |
Q |
| |
|
||| |
|
|
| T |
24765875 |
gca |
24765873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 35410494 - 35410233
Alignment:
| Q |
23 |
tggaaataaaatcaatattaaaagattatccttgtcaaaggtacccataaattaaaatgggaggtagatactgatttggctacacgactttactgagttt |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
35410494 |
tggaaataaaatcagtattaaaagattatcctagtcaaaggtacccataaattaaaatgggaggtagggattgatttggctacacgactttattgagttt |
35410395 |
T |
|
| Q |
123 |
gcctaaataaaagattggtaattaagagatcctaataagtgacatacatccattagagaaatcaatttcgtcaacattcatttcattgagtattagggaa |
222 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
35410394 |
gcataaataaaggattggtaattaagagatcctaataagtgacatacatcagttagagaaatcaatttcgtcaacactcatttcat-------------- |
35410309 |
T |
|
| Q |
223 |
attaattgcaagacctccaatctaaatcaaaggatgaaatgtgaggtaggtgtttaggatcagcaagcaatagtttaggca |
303 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
35410308 |
-----ttgcaagacctccaatgtaaatcaaaggatgaaatgtgaggtaggtgattaggatcagcaaacaatagtttaggca |
35410233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 79472 - 79753
Alignment:
| Q |
23 |
tggaaataaaatcaatattaaaagattatccttgt-caaaggtacccataaattaaaatgggaggtagatactgatttggctacacgactttactgagtt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
79472 |
tggaaataaaatcaatattaaaagattatcctagttcaaaggtacccataaattaaaatgggaggtaggtactgatttggctacacgactttactgagtt |
79571 |
T |
|
| Q |
122 |
tgcctaaataaaagattggtaattaagagatcctaataagtgacatacatccattagagaaatcaatttcgtcaacattcatttcattgagtattaggga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
79572 |
tgcctaaataaaagattggtaattaagagatcctaataagtgacatacataaattagagaaatcaatttcgtcaacactcatttgattgagtattaggga |
79671 |
T |
|
| Q |
222 |
aattaattgcaagacctccaatctaaatcaaaggatgaaatgtgaggtaggtgtttaggatcagcaagcaatagtttaggca |
303 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
79672 |
aatcaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaggtaggtgattaggatcaacaagcaatagtttaggca |
79753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 3929340 - 3929448
Alignment:
| Q |
190 |
tcgtcaacattcatttcattgagtattagggaaatt------aattgcaagacctccaatctaaatcaaaggatgaaatgtgaggtaggtgtttaggatc |
283 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
3929340 |
tcgtcaacattcatttcattgaatattaggggaattataattaattgcaagacctccaatgtaaatcaaaggatgaaatgtgaagtaggtgattaggatc |
3929439 |
T |
|
| Q |
284 |
agcaagcaa |
292 |
Q |
| |
|
||||||||| |
|
|
| T |
3929440 |
agcaagcaa |
3929448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University