View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_108 (Length: 293)
Name: NF1740_low_108
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 5280093 - 5280362
Alignment:
| Q |
17 |
aaataagatcagtttagactttgtcttagttctagagacttaattattattgcactctcttttgtatacttagattttatattatgtttggattgatcga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280093 |
aaataagatcagtttagactttgtcttagttctagagacttaattataattgcactctcttttgtatacttagattttatattatgtttggattgatcga |
5280192 |
T |
|
| Q |
117 |
atgtaatgaagtgagatggaatggaatggtaaataattatcttttattgtttagattttatcttttgcatcttccatcaatactcatgttacaattctta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280193 |
atgtaatgaagtgagatggaatggaatggtaaataattatcttttattgtttagattttatcttttgcatcttccatcaatactcatgttacaattctta |
5280292 |
T |
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| Q |
217 |
attttcagcacaataccccatcaattcctcttgcttgctcagtcttgtttcttgcgttctattttcttcg |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5280293 |
attttcagcacaataccccatcaattcctcttgcttgctcagtcttgtttcttgcgttctatttttttcg |
5280362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 5281073 - 5281012
Alignment:
| Q |
19 |
ataagatcagtttagactttgtcttagttctagagacttaattattattgcactctcttttg |
80 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||| | |||||||||||||| |
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| T |
5281073 |
ataagatcagtttagactttgtcttagttctggagactcaattataactgcactctcttttg |
5281012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 5287984 - 5288037
Alignment:
| Q |
27 |
agtttagactttgtcttagttctagagacttaattattattgcactctcttttg |
80 |
Q |
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| T |
5287984 |
agtttagactttgtcttagttgttgagacttaattataattgcactctcttttg |
5288037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 20352250 - 20352181
Alignment:
| Q |
19 |
ataagatcagtttagactttgtcttagttctagagacttaattattattgcactctcttttgtatactta |
88 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||| |
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| T |
20352250 |
ataagatcagtttagactttgtcttagttgttgagacttaattataattgcactctcttttgtaaactta |
20352181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 7510141 - 7510084
Alignment:
| Q |
99 |
tatgtttggattgatcgaatgtaatgaagtgagatggaatggaatggtaaataattat |
156 |
Q |
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| T |
7510141 |
tatgtttggattgatggaatctgatgaagtgggatggaatggaatggtaactaattat |
7510084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 20359373 - 20359426
Alignment:
| Q |
29 |
tttagactttgtcttagttcta--gagacttaattattattgcactctcttttg |
80 |
Q |
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||||||||||||||||||| | ||||||||||||| |||||||||||||||| |
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| T |
20359373 |
tttagactttgtcttagttgttttgagacttaattataattgcactctcttttg |
20359426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 6236988 - 6237051
Alignment:
| Q |
17 |
aaataagatcagtttagactttgtcttagttctagagacttaattattattgcactctcttttg |
80 |
Q |
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||||| |||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
6236988 |
aaatatgatcagtttagactttttcttggttctggagacttaattataattgcactctcttttg |
6237051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 24020693 - 24020639
Alignment:
| Q |
99 |
tatgtttggattgatcgaatgtaatgaagtgagatggaatggaatggtaaataat |
153 |
Q |
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||||||||||||||| |||||| ||| ||| |||| |||||||||||||||||| |
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| T |
24020693 |
tatgtttggattgatggaatgtgatggagttggatgtaatggaatggtaaataat |
24020639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 13476745 - 13476829
Alignment:
| Q |
90 |
attttatattatgtttggattgatcgaatgtaatgaagtgagatggaatggaatggtaaataattatcttttattgtttagattt |
174 |
Q |
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|||||| | ||||||| |||||| ||||||||| |||||||||||||| | | |||| ||||||| ||| ||||||| ||||| |
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| T |
13476745 |
attttagactatgtttagattgacgaaatgtaatgcagtgagatggaatgaagtagtaattaattatgtttcattgtttggattt |
13476829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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