View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_112 (Length: 288)
Name: NF1740_low_112
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 43653872 - 43654141
Alignment:
| Q |
2 |
gtgaagcagcagagagcactgaaatgagctttgcattgagctcagaaccagatatggcatagctacaagctaatacacttgagttcattgcagccatgtg |
101 |
Q |
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| T |
43653872 |
gtgatgcagcagagggcactgaaatgagctttgcattgagctcagaaccagatatggcatagctacaagctaatacacttgagttcattgcagccatgtg |
43653971 |
T |
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| Q |
102 |
taatggattgctagtttagttctgctgatcgatctgtgatgtgtatcagagtccaaaggaaataaaaattaagtcaacttatgttgcaaggaacaaaggg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653972 |
taatggattgctagtttagttctgctgatcgatctgtgatgtgtatcagagtccaaaggaaataaaaattaagtcaacttatgttgcaaggaacaaaggg |
43654071 |
T |
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| Q |
202 |
tgtaatcaaagattgtggttggcgtgtggataaggtgagattgcattgatttcctattggcaaatcttgt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43654072 |
tgtaatcaaagattgtggttggcgtgtggataaggtgagattgcattgatttcctattggcaaatcttgt |
43654141 |
T |
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