View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_113 (Length: 285)
Name: NF1740_low_113
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_113 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 54 - 264
Target Start/End: Complemental strand, 5655286 - 5655076
Alignment:
| Q |
54 |
tattaagaaaaattattagtgaatttcgtgtgtctatttagtgtgtggatcttcctaaaataccccctgtccaccttaacttttcatttttcaagatcaa |
153 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5655286 |
tattaagaaaaactattagtgaatttcgtgtgtctatttactatgtggatcttcctaaaataccccttgtccaccttaacttttcatttttcaagatcaa |
5655187 |
T |
|
| Q |
154 |
ttggcagtattaatatggatcatgtttagagagagataaaatgcacatagtaaattgcatatggcttatacttcgcacaaaattttcttcaaagggctta |
253 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5655186 |
ttggcagtattaataaggagcatgtttagagagagataaaatgcacatagtaaattgcatatggcttatacttagcacaaaattttcttcaaagggctta |
5655087 |
T |
|
| Q |
254 |
taactaaggac |
264 |
Q |
| |
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|||||| |||| |
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|
| T |
5655086 |
taactagggac |
5655076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 15169961 - 15170001
Alignment:
| Q |
2 |
cataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
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| T |
15169961 |
cataatatatgtaaggttcggggttcaaaccccgaccacca |
15170001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 15178733 - 15178773
Alignment:
| Q |
2 |
cataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
| |
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||||||| |||||||||| |||| ||||||||||||||||| |
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| T |
15178733 |
cataatatatgtaaggttcggggttcaaaccccgaccacca |
15178773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 24623348 - 24623308
Alignment:
| Q |
2 |
cataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
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||||||| |||||||||| |||| ||||||||||||||||| |
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|
| T |
24623348 |
cataatatatgtaaggttcggggttcaaaccccgaccacca |
24623308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7994916 - 7994875
Alignment:
| Q |
1 |
acataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
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|||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
7994916 |
acataatatatgtaaggtctggggttcaaaccccgaccacca |
7994875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 38780011 - 38780051
Alignment:
| Q |
3 |
ataatagatgtaaggtttgggggtcaaaccccgaccaccat |
43 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| |
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| T |
38780011 |
ataatatatgtaaggtttgggattcaaaccccgaccaccat |
38780051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15670674 - 15670633
Alignment:
| Q |
1 |
acataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| |||| |
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|
| T |
15670674 |
acataatatatgtaaggtttggggttcaaaccccgactacca |
15670633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23979448 - 23979407
Alignment:
| Q |
1 |
acataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
23979448 |
acataatatatgtatggtttggggttcaaaccccgaccacca |
23979407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 43356465 - 43356505
Alignment:
| Q |
2 |
cataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||||||| |
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|
| T |
43356465 |
cataatatatgtaaggtttggagttcaaaccccgaccacca |
43356505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 22164300 - 22164260
Alignment:
| Q |
2 |
cataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
22164300 |
cataatatatgtaaggtctggggttcaaaccccgaccacca |
22164260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 9547440 - 9547400
Alignment:
| Q |
2 |
cataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
| |
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||||||| ||| ||||||||||| ||||||||||||||||| |
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| T |
9547440 |
cataatatatgcaaggtttggggttcaaaccccgaccacca |
9547400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 29896325 - 29896285
Alignment:
| Q |
2 |
cataatagatgtaaggtttgggggtcaaaccccgaccacca |
42 |
Q |
| |
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||||||| ||| ||||||||||| ||||||||||||||||| |
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| T |
29896325 |
cataatatatgcaaggtttggggttcaaaccccgaccacca |
29896285 |
T |
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