View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_116 (Length: 281)
Name: NF1740_low_116
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_116 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 36398482 - 36398741
Alignment:
| Q |
1 |
aatataatgagtaacctaagattgcccatctttgataacgcctcagggtcccaatgtgcttcatacagcgtagatggcgatgatttcaaaactatacctt |
100 |
Q |
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| T |
36398482 |
aatataatgagtaacctaagattacccatctttgagaacgcctcagggtcccaatgtgcttcatacagcgtagatggcgatgatttcaaaactatacctt |
36398581 |
T |
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| Q |
101 |
gcacaagttcagttccctaataaacaataatcgtcaataaatataaagtataaattgaagactttcatttatttatataataaggattgccaacaagata |
200 |
Q |
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| T |
36398582 |
gcacaagttcagttccctaataaacaataatcgtcaataaatataaagtataaattgaagactttcatttatttatataataaggattgccaacaagata |
36398681 |
T |
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| Q |
201 |
ggtaagactatatacaaggaatgtgtaaaagtattgtaacattaaatttggcaattacct |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36398682 |
ggtaagactatatacaaggaatgtgtaaaagtattgtaacattaaatttggcaattacct |
36398741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 36406487 - 36406611
Alignment:
| Q |
1 |
aatataatgagtaacctaagattgcccatctttgataacgcctcagggtcccaatgtgcttcatacagcgtagatggcgatgatttcaaaactatacctt |
100 |
Q |
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||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
36406487 |
aatataatgagtaaccttagatttcccatctttgtgaacgcctcagggtcccaatgtgcttcatacagcgtagacggtgaggatttcaaaactatacctt |
36406586 |
T |
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| Q |
101 |
gcacaagttcagttccctaataaac |
125 |
Q |
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| T |
36406587 |
gcacaatttcagttccctaataaac |
36406611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 36406623 - 36406696
Alignment:
| Q |
196 |
agataggtaagactatatacaaggaatgtg-taaaagtattgtaacattaaa-tttggcaattaccttgttttt |
267 |
Q |
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| T |
36406623 |
agataggtaagactgtttacaaagaaagcgataaaagtattgtaacattaaaatttggcaattaccttgttttt |
36406696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 24681306 - 24681246
Alignment:
| Q |
136 |
aataaatataaagtataaattgaagactttcatttatttatataataaggattgccaacaa |
196 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24681306 |
aataaatagaaagtataaattgaagactttcatttatttatataataaggattgccaacaa |
24681246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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