View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_120 (Length: 276)
Name: NF1740_low_120
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 41602558 - 41602745
Alignment:
| Q |
20 |
tctccgacgcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaattgaaattt |
119 |
Q |
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| T |
41602558 |
tctccgacgcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaattgaaattt |
41602657 |
T |
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| Q |
120 |
tcaaacctaataccattgaaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgtag |
207 |
Q |
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| T |
41602658 |
tcaaacctaataccattgaaatttactttaaaatcacatattgaagggttatttgattgattttactccattaaagttgtatgtgtag |
41602745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 9470654 - 9470467
Alignment:
| Q |
20 |
tctccgacgcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaattgaaattt |
119 |
Q |
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| T |
9470654 |
tctccgacgcggcagtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaattgaaattt |
9470555 |
T |
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| Q |
120 |
tcaaacctaataccattgaaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgtag |
207 |
Q |
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| T |
9470554 |
tcaaacctaataccattgaaatttgctttaaaatcaaagattgaagggttatttgattgattttactccattaaagttgtatgtgtag |
9470467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 53721996 - 53721929
Alignment:
| Q |
138 |
aaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgt |
205 |
Q |
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| T |
53721996 |
aaatttgctttaaaatcatagattgaagggttatttgattgattttgctccattaaagttgtatgtgt |
53721929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 7171921 - 7171988
Alignment:
| Q |
138 |
aaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgt |
205 |
Q |
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| T |
7171921 |
aaatttgctttaaaatcacatattgaagggttatttgattggttttgctccattaaagttgtatgtgt |
7171988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 9206658 - 9206725
Alignment:
| Q |
138 |
aaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgt |
205 |
Q |
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| T |
9206658 |
aaatttgctttaaaatcacatattgaagggttattttattgattttgctccattaaagttgcatgtgt |
9206725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 42189361 - 42189296
Alignment:
| Q |
138 |
aaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgt |
203 |
Q |
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|||||| ||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
42189361 |
aaatttgctttaaattcatagattgaagggttatttgattggttttgttccattaaagttgcatgt |
42189296 |
T |
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