View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_124 (Length: 271)
Name: NF1740_low_124
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_124 |
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Alignment Details
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 37256925 - 37256848
Alignment:
| Q |
175 |
tagtctaacgtacttcatatataatatttaccagaaaatcccaaactcgatcagcaggtagaaacaaatacatcagtaa |
253 |
Q |
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| T |
37256925 |
tagtctaacgtacttcatatatg-tatttatcagaaaatcccaaactcgatcagcaggtagaaacaaatacatcagtaa |
37256848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 37257409 - 37257282
Alignment:
| Q |
24 |
ccagtaaagatataagcgtacagaaaaatgtcaataagcttcccatgggtttatcaaaacaattttcattataaaaggtgaaactagagataataaaata |
123 |
Q |
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| T |
37257409 |
ccagtaaagatataagtgcacagaaaaatgtcaataagcttctcatgggtttctc-aaacagttctcagt-taaaaggtgaaactatagataatagtata |
37257312 |
T |
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| Q |
124 |
gtttccttctacgtaatccaattctagtct |
153 |
Q |
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| T |
37257311 |
gcttccttctgcctaatccaattatagtct |
37257282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 25879107 - 25879025
Alignment:
| Q |
85 |
attttcattataaaaggtgaaactagagataataaaatagtttccttctacgtaatccaattctagtctaaggatcaaggcat |
167 |
Q |
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| T |
25879107 |
atttttatgataaaagatggaacgagagataataaaataacttccatatacttaatcaaattctaatctaaggatcaaagcat |
25879025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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