View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_129 (Length: 260)
Name: NF1740_low_129
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_129 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 41944155 - 41944412
Alignment:
| Q |
3 |
catgtccaacaaaattatgtgctttgtcactttgtctatcaaaactacttgtaaattttgtcttagactattattttgctctcaatatacctttgtctat |
102 |
Q |
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| T |
41944155 |
catgcccaataaaattatgtgctttgtcactttgtctatcaaaactacttgtaaattttgtcttagactattattttgctctcaatatacctttgtctat |
41944254 |
T |
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| Q |
103 |
ctgctcttcactttacttatgtttttcttaggttagtagttctcaaaaaccccaaaactccgtatttaacattatttgaaagagccgaggaatccacaac |
202 |
Q |
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| T |
41944255 |
ctgctcttcactttacttatgtttttcttaggttagtagttctcaaaaaccccaaaactccgtatttaacattatttgaaagagccgaggaatccacaac |
41944354 |
T |
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| Q |
203 |
cgagggggatggtttcttccttggcgttatcgcttgaagaaaagtcaaccactgttga |
260 |
Q |
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| T |
41944355 |
cgagggggatggtttcttccttggcgttatcgcttgaagaaaagtgaatcactgttga |
41944412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 260
Target Start/End: Original strand, 41952405 - 41952592
Alignment:
| Q |
73 |
ttattttgctctcaatatacctttgtctatctgctcttcactttacttatgtttttcttaggttagtagttctcaaaaaccccaaaactccgtatttaac |
172 |
Q |
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| T |
41952405 |
ttattttgctagcaatataccttagtttaactgttgttcactttacttgtgtttttcgaagagtagtggttctcataaaacccaaaaatccatatttaac |
41952504 |
T |
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| Q |
173 |
attatttgaaagagccgaggaatccacaaccgagggggatggtttcttccttggcgttatcgcttgaagaaaagtcaaccactgttga |
260 |
Q |
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| T |
41952505 |
attatttgaaagagccgaggaatccacaaccgagggccatggtttcttccttggcattatcacttgaaaaaaagtgaaacattgttga |
41952592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 260
Target Start/End: Original strand, 1212600 - 1212787
Alignment:
| Q |
73 |
ttattttgctctcaatatacctttgtctatctgctcttcactttacttatgtttttcttaggttagtagttctcaaaaaccccaaaactccgtatttaac |
172 |
Q |
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| T |
1212600 |
ttattttgctcgcaatataccttagtttatcttttgttcactttacttgtgtttttcgaagagtagtggttctcataaaccccaaaaatccatatttaac |
1212699 |
T |
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| Q |
173 |
attatttgaaagagccgaggaatccacaaccgagggggatggtttcttccttggcgttatcgcttgaagaaaagtcaaccactgttga |
260 |
Q |
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| T |
1212700 |
attatttgaaagagccgaggaatccacaacggagggccatggtttcttccttggcgttatcgcttgaaaaaaagtgaaacattgttga |
1212787 |
T |
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