View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_13 (Length: 642)

Name: NF1740_low_13
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_13
NF1740_low_13
[»] chr3 (1 HSPs)
chr3 (21-630)||(32258840-32259461)


Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 21 - 630
Target Start/End: Original strand, 32258840 - 32259461
Alignment:
Q  21 gtacctttgatcatatatctatttcctactattgtatgagtggctaatactttagtgtccccgttgtaatttaaatctttttgacaaaaataccaaacgc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32258840 gtacctttgatcatatatctatttcctactattgtatgagtggctaatactttagtgtccccgttgtaatttaaatctttttgacaaaaataccaaacgc 32258939  T
Q  121 gtgtctat--catagcttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccctgtctcctccannnnn 218  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  32258940 gtgtctatatcatagcttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccctgtctcctccattttt 32259039  T
Q  219 nnncctttctgctactagggcttaattttttgttcccctgtgtttgtgtttt-------------gctgcaacacaaacacaggagtgaaccacattagt 305  Q
       |||||||||||   |||||||||||||||||||||| |||||||||||              || ||||||||||||||||||||||||||||||||    
T  32259040 tttcctttctgcta---gggcttaattttttgttcccctatgtttgtgtttgctgcaacacaaacgcagcaacacaaacacaggagtgaaccacattagt 32259136  T
Q  306 tattcacaatcgtcatttaatgtgtttggaaacacgatggtaaattaactatgttattcatatggtcgcattgcaaatccaagcaaacatttaattaatt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  32259137 tattcacaatcgtcatttaatgtgtttggaaacacgatggtaaattaactatgttattcatatggtcgcatcacaaatccaagcacacatttaattaatt 32259236  T
Q  406 ggtttgatattgatctatcaatggaggagaccttacgaggcaacggaaatgtctcactttcatttaattcccagggggtgttgaaaatttgtgtaaaaaa 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32259237 ggtttgatattgatctatcaatggaggagaccttacgaggcaacggaaatgtctcactttcatttaattcccagggggtgttgaaaatttgtgtaaaaaa 32259336  T
Q  506 tgatagaaatgttggctcttatggcattttttctggagataatccatttgatttcactcttccggcaacattgttccaaatcatcgttattgtcgtcctc 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32259337 tgatagaaatgttggctcttatggcattttttctggagataatccattcgatttcactcttccggcaacattgttccaaatcatcattattgtcgtcctc 32259436  T
Q  606 tctcaaactctttactttcttctca 630  Q
    |||||||||||||||||||||||||    
T  32259437 tctcaaactctttactttcttctca 32259461  T

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