View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_138 (Length: 252)
Name: NF1740_low_138
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_138 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9483906 - 9483665
Alignment:
| Q |
1 |
cagtatgcctggttcatatgcaaggttcggtaatagaggtttgttcatgaggagttatacaagattatcgctatccttgtttaaatacatactatatgtg |
100 |
Q |
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| T |
9483906 |
cagtatgcctggttcatatgcaaggttcggtaatagaggtttgttcatgaggagttatacaagattatcgctatccttgtttaaatacatactatatgtg |
9483807 |
T |
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| Q |
101 |
tgatttaatgtgctcttcttttggagattcttctgtgattaatgtaatatcgagaaattaattacttatatttgatcaggtaaccagttttcacacggaa |
200 |
Q |
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| T |
9483806 |
tgatttaatgtgctcttcttttggagattcttctgtgattaatgtaatatcgagaaattaattacttatatttgatcaggtaaccagttttcacacggaa |
9483707 |
T |
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| Q |
201 |
tctgaaactcccaaagcaatgaaaaaggttttacactctctg |
242 |
Q |
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| T |
9483706 |
tcagaaactcccaaagcaatgaaaaatgttttacactctctg |
9483665 |
T |
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