View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_143 (Length: 249)
Name: NF1740_low_143
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_143 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 9483888 - 9484118
Alignment:
| Q |
1 |
atatgaaccaggcatactggaaaacgccgcccaacaacgtcagcacgatgaccaaaacgacgaaacagcctcttcacctatcagatatattatagaagaa |
100 |
Q |
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| T |
9483888 |
atatgaaccaggcatactggaaaacgccgcccaacaacgtcagcacgatgaccaaaacgacgaaacagcctcttcacctatcagatatattatagaagaa |
9483987 |
T |
|
| Q |
101 |
aaaaggtgttttaaaactcactaaaaatgaataatgtgcatctaatatatttgataagtcgaatgattgtcatacaaacctcaataagcttcgctgaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9483988 |
aaaaggtgttttaaaactcactaaaaatgaataatgtgcatctaatttatttgataagtcgaatgattgtcatacaaacctcaataagcttcgctgtggt |
9484087 |
T |
|
| Q |
201 |
gacaacatcaaaatcttttggagttctattc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
9484088 |
gacaacatcaaaatcttttggagttctattc |
9484118 |
T |
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