View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_145 (Length: 249)
Name: NF1740_low_145
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_145 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 52145711 - 52145946
Alignment:
| Q |
1 |
cggtgccaattggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52145711 |
cggtgccaattggcaagcatagcaaattgaacagaaagtctattacagattttgaagcttcagcaaagagaactttctcattctttgtatctataagaag |
52145810 |
T |
|
| Q |
101 |
cttcaaagacactttggtggtagaagaagaagaagccatattggtattgaaagttaatcgtactgtactacattagaagcaaatattaacccaaagagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52145811 |
cttcaaagacactttggtggtagaagaagaagaagccatattggtattgaaagttaatagtactgtactacattagaagcaaatattaacccaaagagtt |
52145910 |
T |
|
| Q |
201 |
gcgtgtggttgttgcaaaaataattaattaaagagt |
236 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
52145911 |
gcgtgtggttgttgcacaaataattaattaaagagt |
52145946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 52142195 - 52142321
Alignment:
| Q |
3 |
gtgccaattggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagct |
102 |
Q |
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||||| |||||||| |||||||| ||||| |||||||||| |||| |||| ||||||| |||||||||||||||| ||||||||| || |||||||||| |
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| T |
52142195 |
gtgccgattggcaaacatagcaagttgaaaagaaagtctacgacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaagct |
52142294 |
T |
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| Q |
103 |
tcaaagacactttggtggtagaagaag |
129 |
Q |
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||| || |||||||||| |||||||| |
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| T |
52142295 |
tcatggagactttggtggaagaagaag |
52142321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 17522392 - 17522266
Alignment:
| Q |
3 |
gtgccaattggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagct |
102 |
Q |
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||||| ||||||||||||||||| ||||| |||||||| | |||| |||| ||||||| |||||||||||||||| ||||||||| || |||||||||| |
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| T |
17522392 |
gtgccgattggcaagcatagcaagttgaaaagaaagtcaaccacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaagct |
17522293 |
T |
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| Q |
103 |
tcaaagacactttggtggtagaagaag |
129 |
Q |
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||| ||||||||||||| |||||||| |
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| T |
17522292 |
tcatggacactttggtggaagaagaag |
17522266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 17020216 - 17020090
Alignment:
| Q |
21 |
agcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagacact---ttgg |
117 |
Q |
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|||| |||||| ||||| ||||| |||| |||| | ||||| ||||| ||||||||||||||| | || || |||||||| || | | |||| |||| |
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| T |
17020216 |
agcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaataagaagtttgagggtcactttgttgg |
17020117 |
T |
|
| Q |
118 |
tggtagaagaagaagaagccatattgg |
144 |
Q |
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||| ||||| ||||||||||||||||| |
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| T |
17020116 |
tggaagaagtagaagaagccatattgg |
17020090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 17550653 - 17550527
Alignment:
| Q |
21 |
agcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagacact---ttgg |
117 |
Q |
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|||| |||||| ||||| ||||| |||| |||| | ||||| ||||| ||||||||||||||| | || || |||||||| || | | |||| |||| |
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| T |
17550653 |
agcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaataagaagtttgagggtcactttgttgg |
17550554 |
T |
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| Q |
118 |
tggtagaagaagaagaagccatattgg |
144 |
Q |
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||| ||||| ||||||||||||||||| |
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| T |
17550553 |
tggaagaagtagaagaagccatattgg |
17550527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 17017000 - 17017121
Alignment:
| Q |
12 |
ggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagaca |
111 |
Q |
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||||||||||||| ||||| |||||||||| || | ||| | ||||| |||||||||||| | ||| ||||||| || |||||||| || | | || |
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| T |
17017000 |
ggcaagcatagcatgttgaaaagaaagtctacgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtca |
17017099 |
T |
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| Q |
112 |
ctttggtggtagaagaagaaga |
133 |
Q |
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||||||||| ||||||||||| |
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| T |
17017100 |
gtttggtggtggaagaagaaga |
17017121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 17547437 - 17547558
Alignment:
| Q |
12 |
ggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagaca |
111 |
Q |
| |
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||||||||||||| ||||| |||||||||| || | ||| | ||||| |||||||||||| | ||| ||||||| || |||||||| || | | || |
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| T |
17547437 |
ggcaagcatagcatgttgaaaagaaagtctacgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtca |
17547536 |
T |
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| Q |
112 |
ctttggtggtagaagaagaaga |
133 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
17547537 |
gtttggtggtggaagaagaaga |
17547558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 18073 - 17952
Alignment:
| Q |
12 |
ggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagaca |
111 |
Q |
| |
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||||||||||||| ||||| ||||||||||| || | ||| | ||||| |||||||||||| | ||||||||||| || |||||||| || | | || |
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| T |
18073 |
ggcaagcatagcatgttgaaaagaaagtctataacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtca |
17974 |
T |
|
| Q |
112 |
ctttggtggtagaagaagaaga |
133 |
Q |
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||||||||| ||||||||||| |
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| T |
17973 |
gtttggtggtggaagaagaaga |
17952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 9054 - 9180
Alignment:
| Q |
21 |
agcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagacact---ttgg |
117 |
Q |
| |
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|||| |||||| ||||| ||||| |||| |||| | ||||| ||||| ||||||||||||||| | || || || ||||| || | | |||| |||| |
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| T |
9054 |
agcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttgg |
9153 |
T |
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| Q |
118 |
tggtagaagaagaagaagccatattgg |
144 |
Q |
| |
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||| ||||| ||||||||||||||||| |
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| T |
9154 |
tggaagaagtagaagaagccatattgg |
9180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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