View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_low_147 (Length: 249)
Name: NF1740_low_147
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_147 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42955410 - 42955639
Alignment:
| Q |
1 |
tttgagaatagattgttcgtatatcaagtgtgattaaagtctcacattgaataaaaaat-acatgttgagaatcatatacatgaaatggtcatgcctaat |
99 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42955410 |
tttgagaagagattgttcgtatatcaaatgtgattaaagtcttaaattgaataaaaaattacatgttgagaatcatatacatgaaatggtcctgcctaat |
42955509 |
T |
|
| Q |
100 |
gtcttgaggtttctgatgaatgtgtggtttccaaatcacttatatggttgttcttaattcaatgtgatgatcaagagatgaaaaaacatttattatcaaa |
199 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42955510 |
gtcttaaggtttctgatgaatgcgtggtttccaaatcactgatatagttgttcttaattcaatgtgatgatcaagagatgaaaaaacattcattatcaaa |
42955609 |
T |
|
| Q |
200 |
gtacatgta-cccacgagagtgtcatggaa |
228 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
42955610 |
gtacatgtaccccacgagagtgtcatggaa |
42955639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 13006393 - 13006346
Alignment:
| Q |
124 |
tggtttccaaatcacttatatggttgttcttaattcaatgtgatgatc |
171 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
13006393 |
tggtgtccaactcacttatgtggttgttcttaatccaatgtgatgatc |
13006346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University