View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_153 (Length: 240)

Name: NF1740_low_153
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_153
NF1740_low_153
[»] chr3 (1 HSPs)
chr3 (11-222)||(8522654-8522865)
[»] chr6 (2 HSPs)
chr6 (17-220)||(25523368-25523571)
chr6 (17-167)||(24140436-24140586)
[»] chr5 (8 HSPs)
chr5 (17-222)||(34233127-34233332)
chr5 (17-222)||(34240900-34241105)
chr5 (17-222)||(41572353-41572558)
chr5 (17-222)||(41617992-41618197)
chr5 (17-222)||(41713892-41714097)
chr5 (17-207)||(42117298-42117488)
chr5 (13-222)||(42123031-42123240)
chr5 (15-222)||(42128425-42128632)
[»] chr4 (1 HSPs)
chr4 (17-222)||(11117694-11117899)
[»] chr2 (3 HSPs)
chr2 (15-113)||(11994732-11994830)
chr2 (15-113)||(12248099-12248197)
chr2 (9-72)||(32682248-32682311)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 8522865 - 8522654
Alignment:
Q  11 aatcatagggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8522865 aatcatagggcttaacctttcccataacagacttacaggtcatattcccaaatccataggaaacttgacatacttggaatctttggatctttcctcaaat 8522766  T
Q  111 atgttaactggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaa 210  Q
    |||||||| | ||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8522765 atgttaaccgatgtgattcctttggaattaaccaatcttaacagtcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcagggaa 8522666  T
Q  211 agcaattcaata 222  Q
    ||||||||||||    
T  8522665 agcaattcaata 8522654  T

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Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 25523368 - 25523571
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||   |||||||||    
T  25523368 agggcttaacctttcccacaacagacttaccggtcatattcccaaatccataggaaacttgacatacttggaatctctggatctttccctgaatatgtta 25523467  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaagcaat 216  Q
    || ||||  ||||||  ||||||||||||| | |||  |||||||||| || ||||||||||||| | | | |||||||||||||||  |||||||||||    
T  25523468 accggtgtgattcctgcggaattaaccaatttaaactttcttgaagtcatgaatctttccaataaccatttggtgggagaaatacctagaggaaagcaat 25523567  T
Q  217 tcaa 220  Q
    ||||    
T  25523568 tcaa 25523571  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 24140586 - 24140436
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  24140586 agggattaacctttcccataacagacttactggtcatattccccaatccatcggaaagttgacatacttggaatctttgaatctttcatcaaatatgtta 24140487  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttg 167  Q
    || || |  ||||||| ||||||||||||| | |||| |||||||||||||    
T  24140486 accggcgtgattccttcggaattaaccaatatgaacagtcttgaagtcttg 24140436  T

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Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 34233127 - 34233332
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    ||||||||||||||| ||||||||||| || |||| ||||||  ||||||||  |||||||||| |||||||||| |||||||| || ||||||||| |     
T  34233127 agggcttaacctttcacataacagactcactggtcctattcctcaatccatacaaaacttgacaaacttggaatcgttggatctctcgtcaaatatgctc 34233226  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaagcaat 216  Q
    ||||||   ||||||   |||||||||||| | |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  34233227 actggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaat 34233326  T
Q  217 tcaata 222  Q
    ||||||    
T  34233327 tcaata 34233332  T

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Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 34240900 - 34241105
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    ||||||||||||||| ||||||||||| || |||| ||||||  ||||||||  |||||||||| |||||||||| |||||||| || ||||||||| |     
T  34240900 agggcttaacctttcacataacagactcactggtcctattcctcaatccatacaaaacttgacaaacttggaatcgttggatctctcgtcaaatatgctc 34240999  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaagcaat 216  Q
    ||||||   ||||||   |||||||||||| | |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  34241000 actggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaat 34241099  T
Q  217 tcaata 222  Q
    ||||||    
T  34241100 tcaata 34241105  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 41572353 - 41572558
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    ||||||||||||||||||||||||||| || |||| ||||||  ||||| ||||||||||| || || ||||||| ||||||||||| ||||||||  |     
T  41572353 agggcttaacctttcccataacagactcaccggtcctattcctcaatccgtaggaaacttgtcaaacatggaatcattggatctttcgtcaaatatactc 41572452  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaagcaat 216  Q
    ||||||| ||||||||  ||||||| |||||| |||  | ||| ||| ||| |||||||  |||| | ||| ||||||||||||||||||||||| || |    
T  41572453 actggtgtaattccttcagaattaatcaatctgaacggtattggagtattgaatctttctcataaccatctagtgggagaaatacctcaaggaaaacagt 41572552  T
Q  217 tcaata 222  Q
    ||||||    
T  41572553 tcaata 41572558  T

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Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 41617992 - 41618197
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    ||||||||||||||||||||||||||| || |||| ||||||  ||||| ||||||||||| || || ||||||| ||||||||||| ||||||||  |     
T  41617992 agggcttaacctttcccataacagactcaccggtcctattcctcaatccgtaggaaacttgtcaaacatggaatcattggatctttcgtcaaatatactc 41618091  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaagcaat 216  Q
    ||||||| ||||||||  ||||||| |||||| |||  | ||| ||| ||| |||||||  |||| | ||| ||||||||||||||||||||||| || |    
T  41618092 actggtgtaattccttcagaattaatcaatctgaacggtattggagtattgaatctttctcataaccatctagtgggagaaatacctcaaggaaaacagt 41618191  T
Q  217 tcaata 222  Q
    ||||||    
T  41618192 tcaata 41618197  T

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Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 41713892 - 41714097
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    |||||||||||||||  |||||| ||| || ||||| |||||  ||||||| |||||||||| | |||||||||| |||||||| || ||||||||| |     
T  41713892 agggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctc 41713991  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaagcaat 216  Q
    ||||||   |||||| |  | ||||||||| |  ||  ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |    
T  41713992 actggtcggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagt 41714091  T
Q  217 tcaata 222  Q
    ||||||    
T  41714092 tcaata 41714097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 42117488 - 42117298
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    ||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||| || |||||||||| |||||||| || ||||||||| |     
T  42117488 agggcttaacctttcccataacagactcaccggtcatattcccaaatccatgggaaacttgtcaaacttggaatcattggatctctcgtcaaatatgctt 42117389  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaag 207  Q
    || |||   || |||   |||||||||||| |  ||  |||| |||||||| ||||||||||||| | ||| |||||| ||||||||||||    
T  42117388 accggtatgatccctgcagaattaaccaatttagactttcttcaagtcttgaatctttccaataaccatctagtgggaaaaatacctcaag 42117298  T

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Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 42123240 - 42123031
Alignment:
Q  13 tcatagggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatat 112  Q
    ||||||||||||||||||||||||||||||| |  |||| ||||||  |||| || ||| ||||| || |||||||||  |||||||| || ||||||||    
T  42123240 tcatagggcttaacctttcccataacagactcaatggtcctattccccaatcaattggatacttgtcaaacttggaatggttggatctctcatcaaatat 42123141  T
Q  113 gttaactggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaag 212  Q
    | | |||| ||  ||||||   ||| |||||||| |   |  |||||||||||| ||| |||| ||||| | ||||||||||||||||||||||||||||    
T  42123140 gctcactgatgtgattcctgcagaactaaccaatttgggctttcttgaagtcttagatatttcaaataaccatcttgtgggagaaatacctcaaggaaag 42123041  T
Q  213 caattcaata 222  Q
    || |||||||    
T  42123040 cagttcaata 42123031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 42128632 - 42128425
Alignment:
Q  15 atagggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgt 114  Q
    ||||| || |||||||||||||||| ||| |  || | |||||| |||||||| |||||||||||| |||||||||  |||||||| || |||||| ||     
T  42128632 ataggactcaacctttcccataacaaactcattggccctattccaaaatccatgggaaacttgacaaacttggaatggttggatctctcatcaaatgtgc 42128533  T
Q  115 taactggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaagca 214  Q
    | |||| ||  ||||||   ||||||| |||| |      |||||||||||| |||||||| ||||| | ||| |||||||||||||||||||||  |||    
T  42128532 tcactgatgtgattcctgcagaattaagcaatttgggttttcttgaagtcttagatctttcaaataaccatctagtgggagaaatacctcaaggaccgca 42128433  T
Q  215 attcaata 222  Q
    ||||||||    
T  42128432 attcaata 42128425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 11117899 - 11117694
Alignment:
Q  17 agggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgtta 116  Q
    ||||||||| ||||||| |||||||||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  11117899 agggcttaatctttcccgtaacagacttactggtcatattcccaactccataggaaacttggcatacttggaatctttggatctttcatcaaatatgtta 11117800  T
Q  117 actggtgcaattcctttggaattaaccaatcttaacaatcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcaaggaaagcaat 216  Q
    ||  |||  ||||||   |||||||||||| |   |  |||||||||||| ||| |||| ||||| | ||| ||||||||||||||||||||||||||||    
T  11117799 accagtgtgattcctgcagaattaaccaatttgggctttcttgaagtcttagatatttcaaataaccatctagtgggagaaatacctcaaggaaagcaat 11117700  T
Q  217 tcaata 222  Q
    ||||||    
T  11117699 tcaata 11117694  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 11994732 - 11994830
Alignment:
Q  15 atagggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatg 113  Q
    ||||||||||||||||||||||||||||| |  |||| |||||| |||||||| |||||||||||| |||||||||   ||||||| || |||||||||    
T  11994732 atagggcttaacctttcccataacagactcattggtcctattcccaaatccatgggaaacttgacaaacttggaatggctggatctctcatcaaatatg 11994830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 12248197 - 12248099
Alignment:
Q  15 atagggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatg 113  Q
    ||||||||||||||||||||||||||||| |  |||| |||||| |||||||| |||||||||||| |||||||||   ||||||| || |||||||||    
T  12248197 atagggcttaacctttcccataacagactcattggtcctattcccaaatccatgggaaacttgacaaacttggaatggctggatctctcatcaaatatg 12248099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 32682248 - 32682311
Alignment:
Q  9 agaatcatagggcttaacctttcccataacagacttacaggtcatattccgaaatccataggaa 72  Q
    ||||||| ||||||||||||||||||||||||||| || | |||||||||  ||||||| ||||    
T  32682248 agaatcagagggcttaacctttcccataacagactcaccgatcatattccccaatccatgggaa 32682311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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