View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_156 (Length: 237)
Name: NF1740_low_156
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_156 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41944496 - 41944714
Alignment:
| Q |
1 |
tagagtaaacaactgaaaacaaatcaaggttcacatttaaacactgatcaaataccttattatggaatatttatttacctgctatagtttacaacaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41944496 |
tagagtaaacaactgaaaacaaatcaaggttcacatttaaacactgatcaaataccttattatggaatatttatttacctgcta--gtttacaacaccaa |
41944593 |
T |
|
| Q |
101 |
accaactgttttataaacactgatctaatactgatgacttttgcatagcaaataaagcatatgatatccaatttgtaggaattatttatcatatgatttc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41944594 |
accaactgtttaataaacactgatctaatactgatgacttttgcatagcaaataaagcatatgatatccaatttgtaggaattatttatcatatgatttc |
41944693 |
T |
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| Q |
201 |
aagtataatttatgttctctg |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
41944694 |
aagtataatttatgttctctg |
41944714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 41952838 - 41952925
Alignment:
| Q |
134 |
atgacttttgcatagcaaataaagcatatgatatccaatttgtaggaattatttatcatatgatttcaagtataatttatgttctctg |
221 |
Q |
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|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41952838 |
atgactcttgcatagcgaatacagcatatgatatccaatttgtaggaattatttatcatctgatttcaagtataatttatgttctctg |
41952925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 1213030 - 1213117
Alignment:
| Q |
134 |
atgacttttgcatagcaaataaagcatatgatatccaatttgtaggaattatttatcatatgatttcaagtataatttatgttctctg |
221 |
Q |
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|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1213030 |
atgactcttgcatagcgaatacagcatatgatatccaatttgtaggaattatttatcatctgatttcaagtataatttatgttctctg |
1213117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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