View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_157 (Length: 236)

Name: NF1740_low_157
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_157
NF1740_low_157
[»] chr7 (8 HSPs)
chr7 (1-220)||(1300567-1300786)
chr7 (4-218)||(8658475-8658689)
chr7 (9-221)||(10495210-10495422)
chr7 (9-221)||(8666536-8666748)
chr7 (9-221)||(13334204-13334416)
chr7 (43-187)||(8653598-8653742)
chr7 (1-94)||(3146376-3146469)
chr7 (9-137)||(8671992-8672120)
[»] chr2 (1 HSPs)
chr2 (22-220)||(16658360-16658558)
[»] chr1 (3 HSPs)
chr1 (4-220)||(4679391-4679607)
chr1 (7-221)||(29464967-29465181)
chr1 (22-122)||(29214527-29214627)
[»] chr4 (1 HSPs)
chr4 (9-221)||(9336730-9336942)
[»] chr3 (1 HSPs)
chr3 (118-220)||(53416896-53416997)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1300567 - 1300786
Alignment:
Q  1 agatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| | |||||    
T  1300567 agatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaatcattcattactgtggccttctttaaaaacttcttat 1300666  T
Q  101 cttccatgtggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1300667 cttccatgtggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcc 1300766  T
Q  201 tgtagatatttccttagcag 220  Q
    ||||||||||||||| ||||    
T  1300767 tgtagatatttccttggcag 1300786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 8658475 - 8658689
Alignment:
Q  4 tttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatctt 103  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  8658475 tttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaatcattcattactttggccttccttaaaaattccttatctt 8658574  T
Q  104 ccatgtggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgt 203  Q
    ||||  ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||     
T  8658575 ccatacggtatctctcagcttcttcaatcattttgttaatttcaaatgttgacaatctttctttttcattgtttatggtgatctggttcatatttcctga 8658674  T
Q  204 agatatttccttagc 218  Q
    |||||||||||||||    
T  8658675 agatatttccttagc 8658689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 10495422 - 10495210
Alignment:
Q  9 attaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttccatg 108  Q
    |||||| |||||||||||||| |  |||||||  |||||||||||| |||| || ||| ||||| |  ||||||||||||| |||| | ||||||| |      
T  10495422 attaacgtccttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccttaagaatttcatatcttcgaca 10495323  T
Q  109 tggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtagata 208  Q
    |||||||||| ||| |||  ||||||||| |||||||| ||  ||||||| |||||||| |||||  | |||||||||   ||| |||| ||||||||||    
T  10495322 tggtatttcttagcttctttaatcatttttttaatttctaacattgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagata 10495223  T
Q  209 tttccttagcagt 221  Q
    | |||||||||||    
T  10495222 tatccttagcagt 10495210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 8666536 - 8666748
Alignment:
Q  9 attaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttccatg 108  Q
    ||||||||||||||||||||| || |||||||  |||||||||||| |||| ||  ||  |||| |  ||||| | |||||||||| | |||||||||      
T  8666536 attaacatccttcttctttaaagccttcttcatattgtaaacacaagaatctaattcacacattaccttggcccttcttaaaaattgcatatcttccaca 8666635  T
Q  109 tggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtagata 208  Q
    |||||||||||||| |||  ||||||||| | ||| || ||  ||||||| |||||||| |||||| | |||||||||   ||| |||| ||||| ||||    
T  8666636 tggtatttctcagcttctttaatcattttttcaatgtcgaacattgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggata 8666735  T
Q  209 tttccttagcagt 221  Q
    ||||| |||||||    
T  8666736 tttccctagcagt 8666748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 13334416 - 13334204
Alignment:
Q  9 attaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttccatg 108  Q
    |||||| || ||||||||||| |  |||||||  |||||||||||| |||| || ||||||||| |  ||||||||||||| |||| ||||||||| |      
T  13334416 attaacgtctttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgaca 13334317  T
Q  109 tggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtagata 208  Q
    ||||||| || ||| |||  ||||||||| | |||||| ||  |||| || |||||||| |||||  | |||||||||   ||| |||| ||||||||||    
T  13334316 tggtattccttagcttctttaatcattttttcaatttctaacattgataacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagata 13334217  T
Q  209 tttccttagcagt 221  Q
    | |||||||||||    
T  13334216 tatccttagcagt 13334204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 8653598 - 8653742
Alignment:
Q  43 ttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttccatgtggtatttctcagcatctgcaatcattttgttaa 142  Q
    |||||||||||| ||||||| ||  | ||| || |||||||||| ||||||| | |||||||||   ||||||||||||| ||| ||||| |||| | ||    
T  8653598 ttgtaaacacaagaatccaatgcgcttattactttggccttcctcaaaaatttcatatcttccacacggtatttctcagcttcttcaatctttttttcaa 8653697  T
Q  143 tttcaaatgttgacaatctttctttttcattgttgatggtgatct 187  Q
    |||||||  ||||||| |||||||| |||||  ||||||||||||    
T  8653698 tttcaaactttgacaacctttctttctcattagtgatggtgatct 8653742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 3146376 - 3146469
Alignment:
Q  1 agatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaatt 94  Q
    ||||||| ||| ||||||||||||||||| ||||| ||||  ||||||||||||||||| || ||||||||| |  |||||||||||| |||||    
T  3146376 agatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttccttagaaatt 3146469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 8672120 - 8671992
Alignment:
Q  9 attaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttccatg 108  Q
    ||||||||  ||||||| ||| || |||||||  |||||||||||| |||| || |||  |||| |  ||||| | |||||||||| | |||||||||      
T  8672120 attaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccaca 8672021  T
Q  109 tggtatttctcagcatctgcaatcatttt 137  Q
    || ||||||||||| |||  |||||||||    
T  8672020 tgatatttctcagcttctttaatcatttt 8671992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 16658558 - 16658360
Alignment:
Q  22 ttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttccatgtggtatttctcag 121  Q
    |||||||| ||||||||||  |||||||||||||||||||| ||||||||| |  |||||||   |||||||| ||||||||||| ||||||| ||||||    
T  16658558 ttctttaaagcattcttcatattgtaaacacaataatccaatgcattcattaccttggccttttgtaaaaatttcttatcttccacgtggtatctctcag 16658459  T
Q  122 catctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtagatatttccttagcag 220  Q
    | ||| |||||||||| |||||||| || |||||||||||||||||||||||| | ||||||||||  || |||||||||||||||| |||||||||||    
T  16658458 cttcttcaatcatttttttaatttccaaggttgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcag 16658360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 4679607 - 4679391
Alignment:
Q  4 tttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatctt 103  Q
    |||||||||||||||||||||||||| |||||||| |  |||||||||||| | ||||| ||| ||||| |  | |||||||||||||||| ||||||||    
T  4679607 tttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatctt 4679508  T
Q  104 ccatgtggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgt 203  Q
    ||  | | ||||||||||| ||| |||||| ||| |||| || |||||||| ||| ||||||||||||||| | ||||||||||  ||||||||||||||    
T  4679507 cctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatttcctgt 4679408  T
Q  204 agatatttccttagcag 220  Q
    ||| ||||| |||||||    
T  4679407 agacatttctttagcag 4679391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 29464967 - 29465181
Alignment:
Q  7 aaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttcca 106  Q
    ||||||||| ||||||||||||| | ||||||||  |||||||||||| |||| || ||| ||||| |  ||||||||||||  |||| | |||||||||    
T  29464967 aaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattacattggccttccttacgaattgcatatcttcca 29465066  T
Q  107 tgtggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtaga 206  Q
      |||||||||||||| |||  ||||||||| | |||||| || ||||| || ||||||||  ||||  | |||||||||  |||| ||||  | |||||    
T  29465067 catggtatttctcagcttctttaatcattttttcaatttctaacgttgataacctttctttgccattagtaatggtgatcacattcatattgtcagtaga 29465166  T
Q  207 tatttccttagcagt 221  Q
    |||||||||||||||    
T  29465167 tatttccttagcagt 29465181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 29214627 - 29214527
Alignment:
Q  22 ttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttccatgtggtatttctcag 121  Q
    |||||||| | ||| ||||  |||||||||||| |||| || ||| || || |  ||||||||||||| |||| | |||||||||  |||||||||||||    
T  29214627 ttctttaaagtatttttcatattgtaaacacaagaatctaatgcactcgttaccttggccttccttaagaattgcatatcttccacatggtatttctcag 29214528  T
Q  122 c 122  Q
    |    
T  29214527 c 29214527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 9336942 - 9336730
Alignment:
Q  9 attaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcatttctgtggccttccttaaaaattccttatcttccatg 108  Q
    ||||||||  ||||||||||| || |||||||  |||||||||||| |||| || |||  |||| |  ||||| | |||||||||| | |||||||||      
T  9336942 attaacattgttcttctttaaagcgttcttcatattgtaaacacaagaatctaatgcacacattaccttggcccttcttaaaaattgcatatcttccaca 9336843  T
Q  109 tggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtagata 208  Q
    || |||||| |||| |||  ||||||||| | ||| || ||  ||||||| |||||||| |||||  | ||||||||    ||| |||| ||||||||||    
T  9336842 tgatatttcgcagcttctttaatcattttttcaatgtcgaacattgacaacctttctttgtcattagtaatggtgattgcgttcatattgcctgtagata 9336743  T
Q  209 tttccttagcagt 221  Q
    ||||| |||||||    
T  9336742 tttccctagcagt 9336730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 53416997 - 53416896
Alignment:
Q  118 tcagcatctgcaatcattttgttaatttcaaatgttgacaatctttctttttcattgttgatggtgatctgattcgtatttcctgtagatatttccttag 217  Q
    ||||| ||| |||||||||| | ||| |||| ||||||||| |||||||| ||| || | ||||| ||||  ||| |||||| | |||||||||||||||    
T  53416997 tcagcttcttcaatcattttttcaatatcaattgttgacaacctttctttgtcactggttatggt-atctagttcttatttcttctagatatttccttag 53416899  T
Q  218 cag 220  Q
    |||    
T  53416898 cag 53416896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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