View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_16 (Length: 629)

Name: NF1740_low_16
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_16
NF1740_low_16
[»] chr2 (7 HSPs)
chr2 (71-614)||(34562294-34562827)
chr2 (416-614)||(34571423-34571618)
chr2 (93-387)||(34571043-34571343)
chr2 (417-614)||(34578892-34579086)
chr2 (417-614)||(34584641-34584835)
chr2 (438-544)||(13576371-13576477)
chr2 (5-69)||(34561947-34562011)
[»] chr8 (8 HSPs)
chr8 (416-614)||(41943900-41944095)
chr8 (416-614)||(25865656-25865851)
chr8 (444-545)||(44343977-44344078)
chr8 (438-544)||(43479673-43479779)
chr8 (423-538)||(26592197-26592312)
chr8 (438-614)||(38799451-38799624)
chr8 (438-520)||(38807043-38807125)
chr8 (438-614)||(38821893-38822066)
[»] chr1 (1 HSPs)
chr1 (416-571)||(7594108-7594263)
[»] chr5 (4 HSPs)
chr5 (434-544)||(12546994-12547104)
chr5 (434-544)||(12531515-12531625)
chr5 (446-529)||(9870019-9870102)
chr5 (441-517)||(9866659-9866735)
[»] scaffold0197 (1 HSPs)
scaffold0197 (438-573)||(31005-31140)
[»] chr7 (3 HSPs)
chr7 (438-573)||(21317568-21317703)
chr7 (438-544)||(3929960-3930066)
chr7 (438-517)||(3928608-3928687)
[»] chr4 (1 HSPs)
chr4 (434-484)||(24860629-24860679)


Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 71 - 614
Target Start/End: Original strand, 34562294 - 34562827
Alignment:
Q  71 tatattttttgaaagaatatttagcaacaatatgtatggtactagtacatgaaaattaaaagcagttgtcaatttgtcatttatgaaagtcttttgacca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34562294 tatattttttgaaagaatatttagcaacaatatgtatggtactagtacatgaaaattaaaagcagttgtcaatttgtcatttatgaaagtcttttgacca 34562393  T
Q  171 atgtagatttgaaagtttctatccccctatttagaaagtgcagaactattgtaccaaaaaatagagagaacgtgaaaacaaccagcattgtttcttgttc 270  Q
    |||||||| |      ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||  |||||    
T  34562394 atgtagatat------ttctatccccctatttagaaagtgcagaacta--gtaccaaaaaatagagagaacgtgaaaacaaccagcatttttt--tgttc 34562483  T
Q  271 aattataattgatcaattacataccaaacttgtgtcataattaaaatggaacaatgcataaaagaaacaactagttatcaagaaaagaaccctaaatcag 370  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  34562484 aattataattgatcaattacataccaaacttgtgtcataactaaaatggaacaatgcataaaagaaactactaatgatcaagaaaagaaccctaaatcag 34562583  T
Q  371 aacaatacaacacataatactaactagtcaataaacctaaccacgacgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaacc 470  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34562584 aacaatacaacacataatactaactagtcaataaccctaaccacgacgttcaccacggatacggcaagcaagttgaatatccttaggcataatggtaacc 34562683  T
Q  471 ctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatc 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34562684 ctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatgactctggaatc 34562783  T
Q  571 tgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34562784 tgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 34562827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 416 - 614
Target Start/End: Original strand, 34571423 - 34571618
Alignment:
Q  416 acgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaacca 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34571423 acgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaacca 34571522  T
Q  516 accaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| ||   | |||||||||||||||||||||    
T  34571523 accaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatcgtaaatccgtcttgaaat---cctgagcaatttcacgaacaaga 34571618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 93 - 387
Target Start/End: Original strand, 34571043 - 34571343
Alignment:
Q  93 agcaacaatatgtatggtactagtacatgaaaat-----taaaagcagttgtcaatttgtcatttatgaaagtcttttgaccaatgtagatttgaaagtt 187  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34571043 agcaacaatatgtatggtactagtacatgaaaatataattaaaagcagttgtcaatttgacatttatgaaagtcttttgaccaatgtagatttgaaagtt 34571142  T
Q  188 tctatccccctatttagaaagtgcagaactattgta--ccaaaaaatagagagaacgtgaaaacaaccagc-attgtttcttgttcaattataattgatc 284  Q
    |||||  |||||||||||||||||||||| |  |||   ||    ||||||||||   ||||||||| |||  || ||| |||||||||| ||||||||     
T  34571143 tctatttccctatttagaaagtgcagaaccagagtatttcagtcgatagagagaaaacgaaaacaacaagctttttttttttgttcaattgtaattgatt 34571242  T
Q  285 aattacataccaaacttgtgtcataattaaaatggaacaatgcataaaagaaacaactagttatcaagaaaagaaccctaaatcagaacaatacaacaca 384  Q
    ||||||||||||||||| |||||||||||| || |||||||||||||||||||| |||| |  | |||||||||||||||||||||||||||||||||||    
T  34571243 aattacataccaaactt-tgtcataattaatat-gaacaatgcataaaagaaactactaatggtaaagaaaagaaccctaaatcagaacaatacaacaca 34571340  T
Q  385 taa 387  Q
    |||    
T  34571341 taa 34571343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 417 - 614
Target Start/End: Original strand, 34578892 - 34579086
Alignment:
Q  417 cgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaa 516  Q
    ||||||||||||||||| ||||||||||||||||||||   ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  34578892 cgttcaccacggatacgacgagcaagttgaatatccttcaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaa 34578991  T
Q  517 ccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 614  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||     |||||||||||||||||||||    
T  34578992 ccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatctcaaatctgtcttgaaat---tctgagcaatttcacgaacaaga 34579086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 417 - 614
Target Start/End: Original strand, 34584641 - 34584835
Alignment:
Q  417 cgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaa 516  Q
    ||||||||||||||||| ||||||||||||||||||||   ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  34584641 cgttcaccacggatacgacgagcaagttgaatatccttcaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaa 34584740  T
Q  517 ccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 614  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||     |||||||||||||||||||||    
T  34584741 ccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatctcaaatctgtcttgaaat---tctgagcaatttcacgaacaaga 34584835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 438 - 544
Target Start/End: Complemental strand, 13576477 - 13576371
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 537  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||    
T  13576477 gcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagctt 13576378  T
Q  538 cctgaag 544  Q
    | |||||    
T  13576377 cttgaag 13576371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 34561947 - 34562011
Alignment:
Q  5 tagattatactagtccataaccctaagcaccttcaccacgtataaaagaaagatgaattgataaa 69  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34561947 tagataatactagtccataaccctaagcaccttcaccacgtataaaagaaagatgaattgataaa 34562011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 5e-64; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 416 - 614
Target Start/End: Complemental strand, 41944095 - 41943900
Alignment:
Q  416 acgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaacca 515  Q
    |||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41944095 acgttcaccacgaatacggcgtgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatcca 41943996  T
Q  516 accaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 614  Q
    |||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||| ||   | |||||||||||||||||||||    
T  41943995 accagataagcttctgctgcttcctgaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaat---cttgagcaatttcacgaacaaga 41943900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 416 - 614
Target Start/End: Complemental strand, 25865851 - 25865656
Alignment:
Q  416 acgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaacca 515  Q
    |||||||||||| ||||| |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||     
T  25865851 acgttcaccacgaatacgacgagcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatccc 25865752  T
Q  516 accaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 614  Q
    || | ||| || || || |||||||||||||| ||||| ||||| ||||| ||||| | |||||  |||| ||   | |||||||||||||||||||||    
T  25865751 acaagataagcctcagcagcttcctgaagtgcaagaacagcatgactctgaaatctcagatccgttttgaaat---cctgagcaatttcacgaacaaga 25865656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 444 - 545
Target Start/End: Complemental strand, 44344078 - 44343977
Alignment:
Q  444 tgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaa 543  Q
    ||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| || || | ||| || || |||||||||||||    
T  44344078 tgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaa 44343979  T
Q  544 gt 545  Q
    ||    
T  44343978 gt 44343977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 544
Target Start/End: Original strand, 43479673 - 43479779
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 537  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| || || |  || ||||| |||||||||||||| | ||| ||||| || ||||    
T  43479673 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggctt 43479772  T
Q  538 cctgaag 544  Q
    | |||||    
T  43479773 cttgaag 43479779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 538
Target Start/End: Complemental strand, 26592312 - 26592197
Alignment:
Q  423 ccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaat 522  Q
    ||||||||||| | |||||| ||||||||||||||||| || ||||| | |||||||||||| || || |  || |||||||||||||| ||||| | ||    
T  26592312 ccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagat 26592213  T
Q  523 atgcttccgctgcttc 538  Q
    | || ||||| |||||    
T  26592212 aagcctccgccgcttc 26592197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 614
Target Start/End: Complemental strand, 38799624 - 38799451
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 537  Q
    ||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| |  || || || ||||| | ||||||||| || ||||| || ||||    
T  38799624 gcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 38799525  T
Q  538 cctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 614  Q
    | ||||| |||  ||| ||   |||||||||||| | ||| | ||||| ||   | |||||||||||||||||||||    
T  38799524 cttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaat---cttgagcaatttcacgaacaaga 38799451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 520
Target Start/End: Complemental strand, 38807125 - 38807043
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaa 520  Q
    ||||||||||| ||||||||||| || ||||| ||||||||||||||||| |||  ||| || |||||||| | |||||||||    
T  38807125 gcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgcacggatttgtgtcctcaaagagaccaaccaa 38807043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 614
Target Start/End: Original strand, 38821893 - 38822066
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 537  Q
    ||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| |  || || || ||||| | ||||||||| || ||||| || ||||    
T  38821893 gcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 38821992  T
Q  538 cctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaaga 614  Q
    | ||||| |||  ||| ||   |||||||||||| | ||| | ||||| ||   | |||||||||||||||||||||    
T  38821993 cttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaat---cttgagcaatttcacgaacaaga 38822066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 416 - 571
Target Start/End: Original strand, 7594108 - 7594263
Alignment:
Q  416 acgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaacca 515  Q
    |||||||||||| || || |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| ||||||||||| |||    
T  7594108 acgttcaccacgaatgcgacgagcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatcca 7594207  T
Q  516 accaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatct 571  Q
    ||||  || || || ||||||||||||||||| ||||| |||||||||||||||||    
T  7594208 accaggtaagcctcagctgcttcctgaagtgcaagaactgcatggctctggaatct 7594263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 434 - 544
Target Start/End: Original strand, 12546994 - 12547104
Alignment:
Q  434 gcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgct 533  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| | ||| ||||| ||     
T  12546994 gcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagca 12547093  T
Q  534 gcttcctgaag 544  Q
    ||||| |||||    
T  12547094 gcttcttgaag 12547104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 434 - 544
Target Start/End: Complemental strand, 12531625 - 12531515
Alignment:
Q  434 gcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgct 533  Q
    |||||| |||||||||||||||||||| || |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| | ||| ||||| ||     
T  12531625 gcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagca 12531526  T
Q  534 gcttcctgaag 544  Q
    ||||| |||||    
T  12531525 gcttcttgaag 12531515  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 446 - 529
Target Start/End: Complemental strand, 9870102 - 9870019
Alignment:
Q  446 aatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttc 529  Q
    |||||||||||||||||| ||||| |||||||||||||| || || | |||  |||| | |||||||||||| ||||| |||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttc 9870019  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 517
Target Start/End: Original strand, 9866659 - 9866735
Alignment:
Q  441 agttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaac 517  Q
    ||||| || |||| ||||||||| ||||| |||||||||||||| ||||| |  || ||||| ||||||||||||||    
T  9866659 agttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaac 9866735  T

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Target: scaffold0197 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 573
Target Start/End: Complemental strand, 31140 - 31005
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 537  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||| || || | ||| ||||| |||||||||||||| | ||| ||||| || ||||    
T  31140 gcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagctt 31041  T
Q  538 cctgaagtgcgagaaccgcatggctctggaatctga 573  Q
    | ||||| ||   ||| |||  ||||||||||||||    
T  31040 cttgaagagcagaaacagcactgctctggaatctga 31005  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 573
Target Start/End: Complemental strand, 21317703 - 21317568
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 537  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||| || || | ||| ||||| |||||||||||||| | ||| ||||| || ||||    
T  21317703 gcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgctt 21317604  T
Q  538 cctgaagtgcgagaaccgcatggctctggaatctga 573  Q
    | ||||| ||   ||| |||  ||||||||||||||    
T  21317603 cttgaagagcagaaacagcactgctctggaatctga 21317568  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 544
Target Start/End: Original strand, 3929960 - 3930066
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 537  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| | ||| ||||| |||||||||||||| | ||| ||||| || ||||    
T  3929960 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagctt 3930059  T
Q  538 cctgaag 544  Q
    | |||||    
T  3930060 cttgaag 3930066  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 517
Target Start/End: Original strand, 3928608 - 3928687
Alignment:
Q  438 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaac 517  Q
    ||||||| |||||||||||||| ||| ||||| |||||||||||||| ||||| | |||  |||| ||||||||||||||    
T  3928608 gcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaac 3928687  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 434 - 484
Target Start/End: Complemental strand, 24860679 - 24860629
Alignment:
Q  434 gcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaat 484  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  24860679 gcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaat 24860629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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