View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_162 (Length: 234)
Name: NF1740_low_162
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_162 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 26033363 - 26033566
Alignment:
| Q |
16 |
aaaataatcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaaagtaaaagaagtaaagcatgaataagaaattacctcctcagccag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26033363 |
aaaataatcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaaagtaaaagaagtaaagcatgaataagaaattacctcctcagccag |
26033462 |
T |
|
| Q |
116 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26033463 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
26033562 |
T |
|
| Q |
216 |
ttat |
219 |
Q |
| |
|
|||| |
|
|
| T |
26033563 |
ttat |
26033566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 38180893 - 38180690
Alignment:
| Q |
22 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
115 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
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|
| T |
38180893 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38180794 |
T |
|
| Q |
116 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38180793 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38180694 |
T |
|
| Q |
216 |
ttat |
219 |
Q |
| |
|
|||| |
|
|
| T |
38180693 |
ttat |
38180690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 38190238 - 38190441
Alignment:
| Q |
22 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataaga---aattacctcctcagccag |
115 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
38190238 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38190337 |
T |
|
| Q |
116 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38190338 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38190437 |
T |
|
| Q |
216 |
ttat |
219 |
Q |
| |
|
|||| |
|
|
| T |
38190438 |
ttat |
38190441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 38208117 - 38207914
Alignment:
| Q |
22 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
115 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
38208117 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38208018 |
T |
|
| Q |
116 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38208017 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38207918 |
T |
|
| Q |
216 |
ttat |
219 |
Q |
| |
|
|||| |
|
|
| T |
38207917 |
ttat |
38207914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 38217463 - 38217666
Alignment:
| Q |
22 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataaga---aattacctcctcagccag |
115 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
38217463 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38217562 |
T |
|
| Q |
116 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38217563 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38217662 |
T |
|
| Q |
216 |
ttat |
219 |
Q |
| |
|
|||| |
|
|
| T |
38217663 |
ttat |
38217666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 38456253 - 38456050
Alignment:
| Q |
22 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
115 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
38456253 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38456154 |
T |
|
| Q |
116 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38456153 |
cttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacatctggttgtaggtga |
38456054 |
T |
|
| Q |
216 |
ttat |
219 |
Q |
| |
|
|||| |
|
|
| T |
38456053 |
ttat |
38456050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 38447258 - 38447179
Alignment:
| Q |
117 |
ttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggacccttttt |
196 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| ||| ||| ||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
38447258 |
ttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttt |
38447179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 53351796 - 53351969
Alignment:
| Q |
44 |
gatagatcaatatttcaaattaaagaaagt-aaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcaccatactt |
142 |
Q |
| |
|
||||||| |||||||||||| ||| ||| ||||||||||||||||||| | ||| |||| | |||||||||||||||||||||||||||| | || |
|
|
| T |
53351796 |
gatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaa---cctcttgagccagcttagaccatttgaattcaccaaagtt |
53351892 |
T |
|
| Q |
143 |
tttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattat |
219 |
Q |
| |
|
||| ||||| ||| ||||| |||| ||||||||||||||| || ||||| |||||||||||| | |||||||||| |
|
|
| T |
53351893 |
gttaaagaaccgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattat |
53351969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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