View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_low_165 (Length: 234)
Name: NF1740_low_165
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_165 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 15305442 - 15305286
Alignment:
| Q |
62 |
aaatattaaatgttctgaagcatgatataatatagaaaagacaaaatatgagcttaaagggatcggagattaattttttccataacaagatgatccgcta |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15305442 |
aaatattaaatgttctgaagcatgatataatatagaaaagacaaaatatgagcttaaagggatcggagattaattttttccataacaagatgatccgcta |
15305343 |
T |
|
| Q |
162 |
agcgaatcagcctcgcttagcgagtccggtagcacctgaaatggacaaatcttcaaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15305342 |
agcgaatcagcctcgcttagcgagt-cggtagcacctgaaatggacaaatcttcaaaa |
15305286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 15305506 - 15305460
Alignment:
| Q |
31 |
atatacaagaattctcttttggatgcaagataaatattaaatgttct |
77 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
15305506 |
atatacaagaattttcttttgcatgcatgataaatattaaatgttct |
15305460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University