View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_168 (Length: 231)
Name: NF1740_low_168
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_168 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 43107362 - 43107576
Alignment:
| Q |
1 |
ccactagtactaggtagaacattcttcttcttatcttcatcatccaaatcctcatcgaaggtgttgtgtaaatgtttatctgttgacatatacacgagta |
100 |
Q |
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| T |
43107362 |
ccactagtactaggtagaacattctccttcttatcttcattatccaaatcctcatcgaaggtgtcatgtaaatgtttatctgttgacatatacacgagta |
43107461 |
T |
|
| Q |
101 |
tttgagcagcaataacaacttcaccactcgaacggcctcttttacaggttttaaacaatcttcgtggccaagattttgattcatcatcaataaccaattc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43107462 |
tttgagcagcaataacaacttcaccactcgaacggcctcttttacaggttttaaacaatcttcgtggccaagattttgattcctcatcaataaccaattc |
43107561 |
T |
|
| Q |
201 |
cttggaattgaatgc |
215 |
Q |
| |
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||||||||||||||| |
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| T |
43107562 |
cttggaattgaatgc |
43107576 |
T |
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