View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_169 (Length: 227)

Name: NF1740_low_169
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_169
NF1740_low_169
[»] chr3 (1 HSPs)
chr3 (9-227)||(8523067-8523285)
[»] chr5 (8 HSPs)
chr5 (9-225)||(42128846-42129062)
chr5 (37-227)||(42117723-42117913)
chr5 (9-225)||(34240459-34240675)
chr5 (9-225)||(42123461-42123677)
chr5 (9-214)||(34232716-34232924)
chr5 (13-227)||(41713475-41713693)
chr5 (116-191)||(41572040-41572115)
chr5 (116-191)||(41617679-41617754)
[»] chr2 (3 HSPs)
chr2 (9-227)||(12248421-12248639)
chr2 (9-227)||(11994290-11994508)
chr2 (9-225)||(32681827-32682043)
[»] chr6 (2 HSPs)
chr6 (9-225)||(25522945-25523161)
chr6 (9-96)||(24140921-24141008)
[»] chr4 (1 HSPs)
chr4 (9-225)||(11118106-11118322)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 8523285 - 8523067
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8523285 caacataatagaagacaattttcctcattggcttgaaacactgcattatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 8523186  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  8523185 ccaaagatcaagcatccatttccagatttaactatttttgatatctcaaacaataactttagtggtcctctaccaaaatcctatttcaaaaagtttgaag 8523086  T
Q  209 ccatgatgaatgttactga 227  Q
    |||||||||||||||||||    
T  8523085 ccatgatgaatgttactga 8523067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 42129062 - 42128846
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||    
T  42129062 caacaacatagaagacaattttcctgattggcttcaaacactgcaatatttgaaagtgttggttttgcaagacaacaagttgcatggtatcattgctaat 42128963  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
    | |||| |||||||||||||||||  ||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||  |||||||    
T  42128962 ctaaagatcaagcatccatttccaagtttaattatttttgatatctcaggcaataactttagcggtccgctaccaaaagcctattttaaaaagtttgaag 42128863  T
Q  209 ccatgatgaatgttact 225  Q
    |||||| ||||||||||    
T  42128862 ccatgaagaatgttact 42128846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 42117913 - 42117723
Alignment:
Q  37 tggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctcaagcatccatttccagatt 136  Q
    |||||||||||||| ||||||||| |||||||| |||| | |||||||||||||||||||||||||  |||||||||| |||||||||||||||||  ||    
T  42117913 tggcttcaaacactacaatatttgcaagtgttggttttacaagacaataagttgcatggtatcattcctaatccaaagatcaagcatccatttccaagtt 42117814  T
Q  137 taactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaagccatgatgaatgttactga 227  Q
    ||| ||||||| |||||||| | |||||||||||  |||| ||||||||||| | ||| ||||  ||||||||||||| ||| ||||||||    
T  42117813 taattattttttatatctcaggaaataactttagctgtccgctaccaaaagcatttttaaaaaaatttgaagccatgaagaaagttactga 42117723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 34240459 - 34240675
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    ||||||||| |||| ||| ||||||   ||||||||||| || ||||| ||||||||| || ||||||||||||||||||||||||||  |||||  |||    
T  34240459 caacaaaatggaagacaaatttcctgtctggcttcaaactctccaatacttgaaagtgctggttttgcgagacaataagttgcatggtcacattgccaat 34240558  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
      |||| ||| ||||||||||||   ||||  ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||  ||||||||    
T  34240559 ttaaagatcaggcatccatttcctagtttagttatttttgatatctcaagcaataactttactggtccgctaccaaaagcctatttaaaatattttgaag 34240658  T
Q  209 ccatgatgaatgttact 225  Q
    |||||| ||| ||||||    
T  34240659 ccatgaagaaagttact 34240675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 42123677 - 42123461
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    |||||||||||||| |||||||||| ||||| |||||||||| ||| ||||||||||  || ||||||||||||||||||| ||||||  ||| |  |||    
T  42123677 caacaaaatagaagacaattttcctgattggtttcaaacacttcaagatttgaaagtactggttttgcgagacaataagtttcatggtcccatcgccaat 42123578  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
      |||| |  ||| || |||||||   ||||  ||||||||||||||  | ||||||||| |||||  |||||||||||||||||  |||| || |||||    
T  42123577 ttaaagattgagcgtctatttccaagcttaatcatttttgatatctctggaaataactttggtggttttctaccaaaagcctattcaaaaaattatgaag 42123478  T
Q  209 ccatgatgaatgttact 225  Q
    |||||| ||||| ||||    
T  42123477 ccatgaagaatgatact 42123461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 34232716 - 34232924
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    |||||||||||||| ||| |||||| | ||| |||||||  ||||| ||||||||||| |  |||| ||||| |||||||||||||||  |||||  |||    
T  34232716 caacaaaatagaagacaaatttcctgactggattcaaactttgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaat 34232815  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctacca---aaagcctatttcaaaatttttg 205  Q
      |||| ||||| ||||||||||   ||||  |||||||||||||||  | ||||||||||||||||| ||||||   |||| |||||||||||  | ||    
T  34232816 ttaaagatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatg 34232915  T
Q  206 aagccatga 214  Q
    |||||||||    
T  34232916 aagccatga 34232924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 41713475 - 41713693
Alignment:
Q  13 aaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaa 112  Q
    ||||||||||||| ||||||| | ||||||| ||| |||    |||||||||||||| ||||| |  |||| ||||||||||||   |||   |||  ||    
T  41713475 aaaatagaaggcagttttcctgagtggcttccaactctgtctcatttgaaagtgttggttttgagtaacaacaagttgcatggtcctatttccaatttaa 41713574  T
Q  113 agctcaagcatccatttcc-agatt--taactattt-ttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
    || |||| ||||||||||| || ||  ||| || || ||||||||||  ||||| |||| |||||||| ||||||||||||||||| |||| || | ||     
T  41713575 agatcaaacatccatttcccagtttattaattaattgttgatatctcgggcaatgacttcagtggtccgctaccaaaagcctatttaaaaaattatcaaa 41713674  T
Q  209 ccatgatgaatgttactga 227  Q
    |||||| ||||||||||||    
T  41713675 ccatgaagaatgttactga 41713693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 41572040 - 41572115
Alignment:
Q  116 tcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagccta 191  Q
    ||||||||||||||||   ||||| |||||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  41572040 tcaagcatccatttcctagtttaattatttttgatatttcatccaataacttcagtggcccactaccaaaagccta 41572115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 41617679 - 41617754
Alignment:
Q  116 tcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagccta 191  Q
    ||||||||||||||||   ||||| |||||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  41617679 tcaagcatccatttcctagtttaattatttttgatatttcatccaataacttcagtggcccactaccaaaagccta 41617754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 12248639 - 12248421
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    |||||||||||||| | | |||||| |||||||||||||||||||| |||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  12248639 caacaaaatagaagacgagtttcctgattggcttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatggtatcattgttaat 12248540  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
    | |||    |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||  |||  |||||||    
T  12248539 ctaaatacaaagcatccatttccaagtttaactatttttgatatctcaggcaataactttagtggtccgctaccaaatgcctattttgaaaagtttgaag 12248440  T
Q  209 ccatgatgaatgttactga 227  Q
    |||||| ||||||| ||||    
T  12248439 ccatgaagaatgttgctga 12248421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 11994290 - 11994508
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    |||||||||||||| | | |||||| |||||||||||||||||||| |||||||||| |||||  ||||||||||||||||||||| |||||||||||||    
T  11994290 caacaaaatagaagacgagtttcctgattggcttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatgatatcattgttaat 11994389  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
    | |||    |||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||  |||  |||||||    
T  11994390 ctaaatacaaagcatccatttccaagtttaactatttttgatatctaaggcaataactttagtggtccgctaccaaatgcctattttgaaaagtttgaag 11994489  T
Q  209 ccatgatgaatgttactga 227  Q
    |||||| ||||||| ||||    
T  11994490 ccatgaagaatgttgctga 11994508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 32681827 - 32682043
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    |||||||||||| | |||||| ||  |||||||||| ||| ||||| |||||||||| ||| ||||||| ||||| ||||||||||||  |||||| |||    
T  32681827 caacaaaatagacgacaatttcccatattggcttcatacaatgcaagatttgaaagtattggttttgcgtgacaacaagttgcatggtcccattgtcaat 32681926  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
      ||||  | | |||| ||||||    ||||  ||||||||||||||  | || ||||| ||||||  | || ||||||| ||||| ||  |||||||||    
T  32681927 ttaaagaacgaacatctatttcctagcttaatcatttttgatatctctggaaacaacttcagtggttttatatcaaaagcttatttaaatttttttgaag 32682026  T
Q  209 ccatgatgaatgttact 225  Q
    |||||| ||||||||||    
T  32682027 ccatgaagaatgttact 32682043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 25522945 - 25523161
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    |||||||||||||| |||||||||  |||||||||||||| ||||  |||||||||||||| ||||||||||||| ||||||||||||  | |||| |||    
T  25522945 caacaaaatagaagacaattttccggattggcttcaaacaatgcaggatttgaaagtgttggttttgcgagacaacaagttgcatggttcccttgtcaat 25523044  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
      |||  |||||||| |||||| |  |||||  ||||||||||||||| | || || ||  |||||  |||||||||||||||||| | || || |||||    
T  25523045 ttaaaaatcaagcattcatttcaaagtttaatcatttttgatatctcaggtaacaatttaggtggttttctaccaaaagcctatttaagaaattatgaag 25523144  T
Q  209 ccatgatgaatgttact 225  Q
    |||||| ||||||||||    
T  25523145 ccatgaagaatgttact 25523161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 24141008 - 24140921
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggt 96  Q
    |||||||||||||| ||||||| || ||||||||| |||||||||||||||| |||| ||| ||||||||||||||||||| ||||||    
T  24141008 caacaaaatagaagacaatttttctgattggcttctaacactgcaatatttggaagtattggttttgcgagacaataagttacatggt 24140921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 11118322 - 11118106
Alignment:
Q  9 caacaaaatagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaat 108  Q
    ||||| |||||||| || ||||||| |||||||||||||| ||| | |||||||||| ||| ||||||||||||||||||||||||||  |||||  |||    
T  11118322 caacagaatagaagacagttttcctgattggcttcaaacattgccagatttgaaagtattggttttgcgagacaataagttgcatggtcccattgaaaat 11118223  T
Q  109 ccaaagctcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaatttttgaag 208  Q
      |||| || |||||| |||||||   ||||  ||||||||||||||  |||| | ||||||||||  |||||||||||||||||| ||||  | |||||    
T  11118222 ttaaagatcgagcatctatttccaagcttaatcatttttgatatctcgggcaacagctttagtggttttctaccaaaagcctatttaaaaaactatgaag 11118123  T
Q  209 ccatgatgaatgttact 225  Q
    | |||| ||||||||||    
T  11118122 ctatgaagaatgttact 11118106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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