View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_170 (Length: 225)
Name: NF1740_low_170
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_170 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 6709339 - 6709122
Alignment:
| Q |
8 |
cgaagaatatacaaatgaatgtgaagaatagcgctagagtttccgctaacaacattgattatattaatttattattaaaaaatctctgtaatttttaatg |
107 |
Q |
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| T |
6709339 |
cgaaaaatatacaaacgaatgtgaagaatagcgctagagtttccgctaacaacattgattatattaatttattattaaaaaatctctgtaatttttaatg |
6709240 |
T |
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| Q |
108 |
tgtacgtatcgtgggttgagtctcctgaaccaaatatatcgcactgctcatattttaaatgatatgacataccatctaatgatgtgatatgcaatcaata |
207 |
Q |
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| T |
6709239 |
tgtacgtatcgtgagttgagtctcctgaaccaaatatatcgcactgctcatattttaaatgatatgacatatcatctaatgatgtgatatgcaatcaata |
6709140 |
T |
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| Q |
208 |
accatgaaattacatgaa |
225 |
Q |
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| T |
6709139 |
accatgaaattacatgaa |
6709122 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 39183530 - 39183494
Alignment:
| Q |
156 |
catattttaaatgatatgacataccatctaatgatgt |
192 |
Q |
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| T |
39183530 |
catattttaaatgacatgacatacaatctaatgatgt |
39183494 |
T |
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