View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_low_171 (Length: 225)
Name: NF1740_low_171
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_171 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 4322551 - 4322509
Alignment:
| Q |
46 |
caaggccggccatgagggg-tgcaaacagctctattgagctgg |
87 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4322551 |
caaggccggccatgagggggtgcaaacagctctattgagctgg |
4322509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 5558793 - 5558755
Alignment:
| Q |
49 |
ggccggccatgaggggtgcaaacagctctattgagctgg |
87 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5558793 |
ggccgggcatgaggggtgcaaacagctctattgagctgg |
5558755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 24608368 - 24608308
Alignment:
| Q |
49 |
ggccggccatgagggg--tgcaaacagctctattgagctggacatcaaaaattttgaggcc |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| | || ||||||||| |||| |
|
|
| T |
24608368 |
ggccggccatgaggggggtgcaaacagctctactgagctgggcctccaaaattttggggcc |
24608308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University