View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_low_177 (Length: 211)
Name: NF1740_low_177
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_177 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 47888072 - 47888246
Alignment:
| Q |
16 |
aaaatataaaaaattgatattactcattgtactctcaaaagtgagtagctcactgtagaagagtttgatctggggattaatatattagnnnnnnnncttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
47888072 |
aaaatataaaaaattgatattactcattgtactctcaaaagtgagtagctcactttagaagagtttgatctgggcattaatatattagaaaaaaaacttg |
47888171 |
T |
|
| Q |
116 |
ccaagattgatatagaacaagcaattaatactttcaaccaaaataaaaacgaatgacactcacggacgataataa |
190 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47888172 |
ccaagattgatatagcacaagcaattaatactttcaaccaaaataaaaacgaatgacactcacggacgataataa |
47888246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 27841058 - 27841122
Alignment:
| Q |
112 |
cttgccaagattgatatagaacaagcaattaatactttcaaccaaaataaaaacgaatgacactcac |
178 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
27841058 |
cttgccaagattgata--gcacaagcaattaaaactttagaccaaaataaaaacaaatgacactcac |
27841122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University