View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_18 (Length: 611)
Name: NF1740_low_18
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Original strand, 33871704 - 33872293
Alignment:
| Q |
18 |
tctcattacctaaaacttctcgaattagtaaaagttctgttcacaaaatgtttgagcaaccatacgccatatcaacttctgccaaacaatacaaacaaag |
117 |
Q |
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| T |
33871704 |
tctcattacctaaaacttctcgaattagtaaaagttctgttcacaaaatgtttgagcaaccatacgccatatcaacttctgccaaacaatacaaacaaag |
33871803 |
T |
|
| Q |
118 |
taaaacaccggaatattctgcttttcttacatgttagacatgtctaatttacaatttttaagcctcaaacatggcctatttattcccacagatatataca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33871804 |
taaaacaccggaatattctgcttttcttacatgttagacatgtctaatttacaatttttaagccttaaacatggcctatttattcccacagatatataca |
33871903 |
T |
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| Q |
218 |
gacaca--gattttcatgttctaactatatatatacctcacctcagaattgtcaaaaagaaaattataaatatctcagtatatctttttccatttcaaac |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33871904 |
gacacaaagattttcatgttctaactatatatatacctcacctcagaattgtcaaaaagaaaattataaatatctcagtatatctttttccatttcaaac |
33872003 |
T |
|
| Q |
316 |
aattatattacctatggagtggttaacttagtcacacatcacccagtttatttctaacagtaagtaatcaaccactccccttcctgagtgacaacaatta |
415 |
Q |
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|||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33872004 |
aattatattacctatggagtagttaccttagtcaaacatcacccagtttatttctaacagtaagtaatcaaccactccccttcctgagtgacaacaatta |
33872103 |
T |
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| Q |
416 |
taacttatgatcacctgtttatatctacggcaatcaaatctgatggaactcaaacgatctttatccatatcaatcttcacattcaactacagaaccgata |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33872104 |
taacttatgatcacctgtttatatctacggcaatcaaatctgatggaactcaaacgatctttatccatatcaatcttcacattcaactacagaaccgata |
33872203 |
T |
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| Q |
516 |
gttgaatcaccgcaaccattgcactgccagatacgatacaacggccggcccactgttgcaccaaaatctatcatattcatatcctccttt |
605 |
Q |
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| T |
33872204 |
gttgaatcaccgcaaccattgcactgccagatacgatacaacggccggcccactgttgcaccaaaatctatcatattcatatcctccttt |
33872293 |
T |
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