View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_2 (Length: 981)
Name: NF1740_low_2
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 5759163 - 5758660
Alignment:
| Q |
1 |
cattttggtgtcatgttagggtgaagaaaagctccttccaaagaatagaacaatcagtaaaggaaaatcagacagattaaaaaatctttcatgatagtca |
100 |
Q |
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| T |
5759163 |
cattttggtgtcatgttagggtgaagaaa-gctccttccaaagaatagaacaatcagtaaaggaaattcagaccgattaaaaaatctttcatgatagtca |
5759065 |
T |
|
| Q |
101 |
tggataatttcgaacagaactaagtactaaaaattgttatctatatctcaacacctatgtgagtaccctacactatcgcacaaaaacacatattttacgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5759064 |
tggataatttcgaacagaactaagtactaaaaattgttatctatatctcaacacctatgtgagtaacctacactatcgcacaaaaacacatattttacgg |
5758965 |
T |
|
| Q |
201 |
taatcctatcgtattgatttactaaaaaagttgtatatcctacaagtaatgtttactactcatattttgcttcattgtaaaagtcatatttttatttcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5758964 |
taatcctatcgtattgatttactaaaaaagttgtatatcctacaagtaatgtttactactcatattttgcttcattgtaaaagtcatatttttatttcat |
5758865 |
T |
|
| Q |
301 |
attttcctttttcataaatgtcatctttacaattactatcataaataaataaaagtatttttatggttcgtgtctttcttgatcgtgaaaatcatcttta |
400 |
Q |
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| T |
5758864 |
attttcctttttcataaatgtcatctttacaattactatcataaataaataaaagtatttttacggttcatgtctttcttgatcgttaaaatcatcttta |
5758765 |
T |
|
| Q |
401 |
gataaaagttgttgggtacccaaaaatattttggaattaaaaacaaaatgtttatggggtggccaaaagattgttggccacacttgacaattttctcgaa |
500 |
Q |
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| T |
5758764 |
aataaaagttgttgggtacccaaaaatattttggaattaaaaacaaaatgtttatgggatggcc-aaagattgttggccacacttaacaattttcttgaa |
5758666 |
T |
|
| Q |
501 |
taattt |
506 |
Q |
| |
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||||| |
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| T |
5758665 |
caattt |
5758660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 552 - 970
Target Start/End: Complemental strand, 5758652 - 5758234
Alignment:
| Q |
552 |
aagtaaatcacttcaaaatacgaaaatgagaaaatcacaatctctaaataaatcacataatataggacggatgaagtattactttgactatgctaaaatg |
651 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5758652 |
aagtaaatcacttcaaaatacgaaaatgagaaaatcacaatctctaagtaaatcacataatataggacggatgaagtattactttgactatgctaaaa-g |
5758554 |
T |
|
| Q |
652 |
attcaagaaataactatccatggtcacattgttaccannnnnnngaggcaaggtcataatgttacctaaagctcaagtttccaaaaatgtgaagaaaatc |
751 |
Q |
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| T |
5758553 |
attcaaaaaataacaatccatggtcacattgttaccatttttttgaggcaacgtcataatgttacctaaagctcaagtttccaaaaatgtgaagaaaatc |
5758454 |
T |
|
| Q |
752 |
aaatcctattgttgtgttgttgggtgaggaccacgtctaaaatgagggtagagtagaggtagggatgatgatggaagatgattactattagtgttcacta |
851 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5758453 |
aaatcctattgttgtgttgttgggtgaggaccacgtctaaaatgagggtagagtagaggtagggatgatgatggaagatgattactattagtgttcacta |
5758354 |
T |
|
| Q |
852 |
ctagtgtcaagtaattgattgccttagcatgcatagatatcaacttcttccttatttgtatttcgttaagattcgtgtcttcat-ctttatctttatgtt |
950 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
5758353 |
ctagtgtcaagtaattgattgccttagcatgcatagatatcaacttcttccttatttgtatttcgttaagattcgtgtcttcatcctttatctctatgtt |
5758254 |
T |
|
| Q |
951 |
cctaaatctgttttgttcat |
970 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5758253 |
cctaaatctgttttgttcat |
5758234 |
T |
|
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