View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_20 (Length: 607)

Name: NF1740_low_20
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_20
NF1740_low_20
[»] chr4 (4 HSPs)
chr4 (19-369)||(4166587-4166957)
chr4 (370-591)||(4167038-4167263)
chr4 (553-591)||(4174212-4174250)
chr4 (192-224)||(8810859-8810891)
[»] chr7 (2 HSPs)
chr7 (281-331)||(46723130-46723180)
chr7 (190-223)||(40013268-40013301)
[»] chr5 (2 HSPs)
chr5 (190-224)||(28489187-28489221)
chr5 (190-223)||(972685-972718)
[»] chr3 (3 HSPs)
chr3 (190-222)||(10511228-10511260)
chr3 (190-223)||(10514552-10514585)
chr3 (190-223)||(10661988-10662021)
[»] chr2 (2 HSPs)
chr2 (190-224)||(43691092-43691126)
chr2 (190-223)||(4793751-4793784)
[»] chr8 (1 HSPs)
chr8 (190-223)||(25063344-25063377)
[»] chr6 (2 HSPs)
chr6 (190-223)||(9297761-9297794)
chr6 (190-223)||(9727499-9727532)
[»] chr1 (1 HSPs)
chr1 (190-223)||(10430430-10430463)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 4166587 - 4166957
Alignment:
Q  19 agcaaaaaaccaagtttatggagaacctgctgcaaccgtctcagattgaacccaaaacccattaagaattgttattctagacatggaaatcaggtcatt- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4166587 agcaaaaaaccaagtttatggagaacctgctgcaaccgtctcagattgaacccaaaacccattaagaattgttattctagacatggaaatcaggtcatta 4166686  T
Q  118 ---tcatatctcaattttttgtcatctataagactataactcatttagtattgaatgcatatttatgttaattaaaagtcctagttcaactgacaaaaat 214  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  4166687 atttcatatctcaattttttgtcatctataagactataactcatttagtattgaatgcatatttatgttaattaaaagtcccagctcaacggacaaaaat 4166786  T
Q  215 gccgaaattaaatgtataatttagaaactattattttttatatttatggcaatcatgaatgtgtt----------------aatgagattactttcgtgc 298  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||                |||||||||||||||| ||    
T  4166787 gccgaaattaaatgtataatttaaaaactattattttttatttttatggcaatcatgaatgtgttttgataaaaaattatgaatgagattactttcgcgc 4166886  T
Q  299 attttgttttttggttgcttcgtaacattaagtttttacacgaaaaaattaagattaatttcatgtttact 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4166887 attttgttttttggttgcttcgtaacattaagtttttacacgaaaaaattaagattaatttcatgtttact 4166957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 370 - 591
Target Start/End: Original strand, 4167038 - 4167263
Alignment:
Q  370 ctcttactaattctatgctaaaatttgacaatgcagctccatagacacaatggtagagaaacaaattggctaaatccacctcttactcacacaccttggc 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167038 ctcttactaattctatgctaaaatttgacaatgcagctccatagacacaatggtagagaaacaaattggctaaatccacctcttactcacacaccttggc 4167137  T
Q  470 tccttgtgaatggccaatatgtgaatgctgatgttagtaac----nnnnnnnnncttaactaacatattaatctttgataacttaagcacttatatttct 565  Q
    |||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||| |||||||||||||    
T  4167138 tccttgtgaatggccaatatgtgaatgctgatgttagtaactttttttttttttcttaactaacatattaatctttgataacttaaacacttatatttct 4167237  T
Q  566 ctcccttattaatattcctaattctt 591  Q
    ||||||||||||||||||||||||||    
T  4167238 ctcccttattaatattcctaattctt 4167263  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 553 - 591
Target Start/End: Original strand, 4174212 - 4174250
Alignment:
Q  553 cacttatatttctctcccttattaatattcctaattctt 591  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  4174212 cacttaaatttctctcccttattaacattcctaattctt 4174250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 8810891 - 8810859
Alignment:
Q  192 gtcctagttcaactgacaaaaatgccgaaatta 224  Q
    ||||||| |||||||||||||||||||||||||    
T  8810891 gtcctagctcaactgacaaaaatgccgaaatta 8810859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 46723180 - 46723130
Alignment:
Q  281 atgagattactttcgtgcattttgttttttggttgcttcgtaacattaagt 331  Q
    ||||||| || ||| ||||||| ||||||||||||||||||||||||||||    
T  46723180 atgagatcaccttcatgcatttcgttttttggttgcttcgtaacattaagt 46723130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 40013268 - 40013301
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    ||||||||| ||||||||||||||||||||||||    
T  40013268 aagtcctagctcaactgacaaaaatgccgaaatt 40013301  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 28489187 - 28489221
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatta 224  Q
    |||||||||||||||||||||||||||||||||||    
T  28489187 aagtcctagttcaactgacaaaaatgccgaaatta 28489221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 972718 - 972685
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    |||||||||||||||||||||||||| |||||||    
T  972718 aagtcctagttcaactgacaaaaatgtcgaaatt 972685  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 10511228 - 10511260
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaat 222  Q
    |||||||||||||||||||||||||||||||||    
T  10511228 aagtcctagttcaactgacaaaaatgccgaaat 10511260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 10514552 - 10514585
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    ||||||||||||||| ||||||||||||||||||    
T  10514552 aagtcctagttcaacagacaaaaatgccgaaatt 10514585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 10661988 - 10662021
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    ||||| ||||||||||||||||||||||||||||    
T  10661988 aagtcatagttcaactgacaaaaatgccgaaatt 10662021  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 43691092 - 43691126
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatta 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  43691092 aagtcttagttcaactgacaaaaatgccgaaatta 43691126  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 4793751 - 4793784
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  4793751 aagtcctagttcaactgacaaaaatgctgaaatt 4793784  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 25063344 - 25063377
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    ||||||||||||||||| ||||||||||||||||    
T  25063344 aagtcctagttcaactggcaaaaatgccgaaatt 25063377  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 9297761 - 9297794
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    |||||||||||||||||||||||||| |||||||    
T  9297761 aagtcctagttcaactgacaaaaatgtcgaaatt 9297794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 9727499 - 9727532
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    |||||||||||||||||||||||||| |||||||    
T  9727499 aagtcctagttcaactgacaaaaatgtcgaaatt 9727532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 10430463 - 10430430
Alignment:
Q  190 aagtcctagttcaactgacaaaaatgccgaaatt 223  Q
    ||||||||| ||||||||||||||||||||||||    
T  10430463 aagtcctagctcaactgacaaaaatgccgaaatt 10430430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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