View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_22 (Length: 594)
Name: NF1740_low_22
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 16 - 579
Target Start/End: Complemental strand, 35273335 - 35272773
Alignment:
| Q |
16 |
atatgcagcttaaatcaacaacttaaatagaggttgatttagttggtaagaagttcaaattgcataaccgttnnnnnnncggttacctgccattgggtta |
115 |
Q |
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| T |
35273335 |
atatgcagcttaaatcaacaacttaaatagaggttggtttagttggtaagaagttcaacttgcataaccgttaaaaaaacggttaccggccattgggtta |
35273236 |
T |
|
| Q |
116 |
atgtaggaaagagatgggttgcgagacagagagagattggcagtggtatgtcgccatcaacggtggaggtctgacttgcgagctgatgcaaaggaagcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273235 |
atgtaggaaagagatgggttgcgagacagagagagattggcagcggtatgtcgccatcaacggtggaggtctgacttgcgagctgatgcaaaggaagcaa |
35273136 |
T |
|
| Q |
216 |
cctcactgcgacgctacggaccgtgtgcatggctgttatttgtgtgctgaggcagcctgtgccagcttaattggttttatcccggttcaaaggattggac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273135 |
cctcactgcgacgctacggaccgtgtgcatggctgttatttgtgtgctgaggcagcctgtgccagcttaattggttttatcccggttcaaaggattggac |
35273036 |
T |
|
| Q |
316 |
cgcacaaatatctggttcaaggttcaactgttttacctgtcagtctggcccggttcactaatcgatcacaaagtagaatataaaaatgaaaagattttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273035 |
cgcacaaatatctggttcaaggttcaactgttttacctgtcagtctggcccggttcactaatcgatcacaaagtagaatataaaaatgaaaagattttct |
35272936 |
T |
|
| Q |
416 |
tattttgtttgactctgcatactcacactattaactcgaccttagttcaacattttcatcatccattaatcttcttcttcatctaagtgcaatttccttc |
515 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35272935 |
tattttgtttgactctgcatactcacactattaactccaccttagttcaacattttcatcatccattaatcttcttcttcatctaagtgcaatttccttc |
35272836 |
T |
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| Q |
516 |
aacatgaaccagaaaaatcccaaagaagaactgtgagaaaaatcgctgcatgcatgcatgtttt |
579 |
Q |
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| T |
35272835 |
aacatgaaccagaaaaatcccaaagaagaactgtgagaaaaa-cgctgcatgcatgcatgtttt |
35272773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 35279498 - 35279462
Alignment:
| Q |
485 |
tcttcttcttcatctaagtgcaatttccttcaacatg |
521 |
Q |
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| T |
35279498 |
tcttcttcttcatctaagtgcaatttccttcatcatg |
35279462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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