View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_low_23 (Length: 590)
Name: NF1740_low_23
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 572
Target Start/End: Complemental strand, 30173092 - 30172534
Alignment:
| Q |
9 |
agcacagagacacaatcttgattctgtaattatctcaaagggagctcaaaaaatggccaacatgcctcctcttgacaacgtattcattcattcttcattc |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30173092 |
agcacagagacacaatcttgcttctgtaattatctcaaagggagctcaaaaaatggccaacatgcctcctcttgacaacgtattcattcatttttcattc |
30172993 |
T |
|
| Q |
109 |
atcattttcannnnnnnncttgattaatgatcat--gtattgatattaatgttataatttctgtgtgtcacgca----gtttgctccacaatactgtgga |
202 |
Q |
| |
|
| |||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
30172992 |
tt---tttc---------cttgattaatgataatatgtaatgatattaatgttataatttctgtgtgtcacgcatgcagtttgctccacaatactatgga |
30172905 |
T |
|
| Q |
203 |
cttctttgtagtgatgctaacaacatgcattacttctacacggaaaacaacaccatgattcttgtaatcaacgaccaaacagtcacgaccgctaccgaac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||| ||||||||||||| |
|
|
| T |
30172904 |
cttctttgtagtgatgctaacaacatgcattacttctacacggaaaacagcaccatgattcttgtcatcaacagccacacagtcacaaccgctaccgaac |
30172805 |
T |
|
| Q |
303 |
tcaaccaaattcataaccttataatgtcactcaaattcgataatatccaaaccaa-atagtacagtttcttgaatgttggggtcgtggtgtgcttttagt |
401 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||| |||||| ||| |||||||| | ||| || ||||||||||||||||||| |||||||||||| || |
|
|
| T |
30172804 |
tcaatcaaattcataatcttatactgtcactcaagttcgatgctatacaaaccaatacagtgcactttcttgaatgttggggtcttggtgtgctttttgt |
30172705 |
T |
|
| Q |
402 |
agtgtcaggatttgtgaaaatcgaagatgttgcggaattttgcaagtttgtttacagcatctatcttgctccacaaggaaatggtaatggttattttata |
501 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| |||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30172704 |
tgtttcaggatttgtgaaaatcgaagatattgcagaatgtcgcaagtttgttcacaccatctatcttgctccacaaggaaatggtaatggttattttata |
30172605 |
T |
|
| Q |
502 |
aagaatgatattcttcaaatcattacccatgatcatcttgtaggacatgaatcaaaaccagtagccccaat |
572 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30172604 |
aagaatgatattcttcatatcattacccatgatcatcttgtagcacatgaatcaaaaccagtagccccaat |
30172534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 367 - 572
Target Start/End: Complemental strand, 30176635 - 30176431
Alignment:
| Q |
367 |
tttcttgaatgttggggtcgtggtgtgcttttagtagtgtcaggatttgtgaaaatcgaagatgttgcggaattttgcaagtttgtttacagcatctatc |
466 |
Q |
| |
|
|||| |||||||||||||| ||||||||| || || || |||||||||||||||||| ||||| |||| |||| | ||||||||||| ||| |||||||| |
|
|
| T |
30176635 |
tttcgtgaatgttggggtcttggtgtgctatttgttgtttcaggatttgtgaaaatc-aagatattgcagaatgtcgcaagtttgttcacaccatctatc |
30176537 |
T |
|
| Q |
467 |
ttgctccacaaggaaatggtaatggttattttataaagaatgatattcttcaaatcattacccatgatcatcttgtaggacatgaatcaaaaccagtagc |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30176536 |
ttgctccacaaggaaatggtaatggttattttataaagaatgatattcttcatatcattacccatgatcatcttgtagcacatgaatcaaaaccagtagc |
30176437 |
T |
|
| Q |
567 |
cccaat |
572 |
Q |
| |
|
|||||| |
|
|
| T |
30176436 |
cccaat |
30176431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 387 - 572
Target Start/End: Complemental strand, 30144927 - 30144748
Alignment:
| Q |
387 |
tggtgtgcttttagtagtgtcaggatttgtgaaaatcgaagatgttgcggaattttgcaagtttgtttacagcatctatcttgctccaca--aggaaatg |
484 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||||| | ||||| | ||||||||||| ||||||| |||||||||||| | | ||| |
|
|
| T |
30144927 |
tggtgtgcttttagttgtatcaggatttgtgaaaatcaaagataccgtggaatgtcgcaagtttgttcacagcatgtatcttgctccataccaagaa--- |
30144831 |
T |
|
| Q |
485 |
gtaatggttattttataaagaatgatattcttcaaatcattacccatgatcatcttgtaggacatgaatcaaaaccagtagccccaat |
572 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| |||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
30144830 |
-----ggttattttataaagagtgatattcttcatatcattactcatgatcatcaagtaccacatgaattaaaaccagtagccccaat |
30144748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 127 - 276
Target Start/End: Complemental strand, 30145206 - 30145042
Alignment:
| Q |
127 |
cttgattaatgatcatgtattgatattaatgttataatttctgtgtgtcacgcag------------tttgctccacaatactgtggacttctttgtag- |
213 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||| |||||||||||| || |
|
|
| T |
30145206 |
cttgattaatgataatgtaatgatattaatgtgataatttctgtgtgtcacgcagttgggtgaatcctttgcttcacaatactatggacttctttgcagt |
30145107 |
T |
|
| Q |
214 |
--tgatgctaacaacatgcattacttctacacggaaaacaacaccatgattcttgtaatcaacga |
276 |
Q |
| |
|
|||||||||||| |||||| |||||||| | ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
30145106 |
gatgatgctaacaaaatgcatgacttctactccgaacacagcaccatgattcttgtaatcgacga |
30145042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University