View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_25 (Length: 568)

Name: NF1740_low_25
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_25
NF1740_low_25
[»] chr1 (20 HSPs)
chr1 (8-254)||(7103999-7104253)
chr1 (416-568)||(7101511-7101662)
chr1 (250-340)||(7102883-7102973)
chr1 (8-66)||(7104290-7104348)
chr1 (262-335)||(7587486-7587561)
chr1 (8-72)||(15321060-15321124)
chr1 (402-500)||(29147765-29147862)
chr1 (402-502)||(45417855-45417953)
chr1 (416-500)||(50882002-50882084)
chr1 (402-500)||(8447819-8447915)
chr1 (33-75)||(45967843-45967885)
chr1 (402-500)||(47215621-47215718)
chr1 (404-500)||(49241400-49241491)
chr1 (417-498)||(6143781-6143860)
chr1 (437-500)||(50328033-50328095)
chr1 (437-500)||(52714793-52714855)
chr1 (402-500)||(32914964-32915060)
chr1 (402-480)||(44294098-44294175)
chr1 (402-500)||(45383861-45383957)
chr1 (416-500)||(33358050-33358132)
[»] chr8 (14 HSPs)
chr8 (402-498)||(43397655-43397750)
chr8 (437-500)||(31597065-31597127)
chr8 (402-500)||(29440414-29440511)
chr8 (21-98)||(34695821-34695899)
chr8 (402-502)||(38708184-38708283)
chr8 (402-500)||(30439398-30439494)
chr8 (8-77)||(32166627-32166696)
chr8 (434-480)||(9549110-9549156)
chr8 (402-496)||(20174767-20174860)
chr8 (402-496)||(20219494-20219587)
chr8 (402-496)||(36424497-36424590)
chr8 (442-500)||(39211163-39211221)
chr8 (417-502)||(16327041-16327125)
chr8 (421-461)||(39543453-39543492)
[»] chr6 (10 HSPs)
chr6 (402-499)||(31749448-31749543)
chr6 (437-500)||(35213453-35213515)
chr6 (402-500)||(1369443-1369539)
chr6 (402-500)||(13143274-13143370)
chr6 (437-498)||(2688958-2689019)
chr6 (402-502)||(26832729-26832827)
chr6 (437-500)||(32459408-32459470)
chr6 (442-500)||(3832585-3832642)
chr6 (437-499)||(6271464-6271525)
chr6 (442-500)||(18141193-18141250)
[»] chr5 (15 HSPs)
chr5 (402-500)||(9226383-9226480)
chr5 (417-500)||(34270425-34270506)
chr5 (402-502)||(15008440-15008538)
chr5 (437-500)||(189595-189657)
chr5 (402-501)||(34888699-34888797)
chr5 (417-500)||(43441836-43441917)
chr5 (9-75)||(973127-973193)
chr5 (402-500)||(8675325-8675421)
chr5 (416-502)||(38704087-38704171)
chr5 (437-500)||(10649552-10649614)
chr5 (437-500)||(32912155-32912217)
chr5 (402-500)||(15952937-15953033)
chr5 (432-502)||(31955247-31955316)
chr5 (434-500)||(41724303-41724369)
chr5 (12-77)||(7113610-7113675)
[»] chr2 (20 HSPs)
chr2 (399-500)||(22525888-22525987)
chr2 (417-502)||(14233608-14233692)
chr2 (399-501)||(16677750-16677853)
chr2 (402-500)||(34119544-34119640)
chr2 (417-498)||(9377554-9377633)
chr2 (399-500)||(23352799-23352898)
chr2 (417-502)||(28245826-28245908)
chr2 (404-500)||(2563789-2563883)
chr2 (402-500)||(7648473-7648569)
chr2 (417-500)||(10711822-10711903)
chr2 (417-500)||(32869924-32870005)
chr2 (437-500)||(36517313-36517375)
chr2 (421-500)||(42678851-42678929)
chr2 (437-502)||(15245650-15245713)
chr2 (437-502)||(9634326-9634390)
chr2 (437-498)||(11384908-11384969)
chr2 (443-500)||(13765523-13765579)
chr2 (417-502)||(41586558-41586642)
chr2 (448-496)||(31415038-31415085)
chr2 (416-500)||(36211952-36212034)
[»] chr4 (15 HSPs)
chr4 (417-500)||(39344872-39344953)
chr4 (402-502)||(18882865-18882963)
chr4 (402-496)||(33860729-33860822)
chr4 (416-500)||(22819746-22819828)
chr4 (437-500)||(17683458-17683520)
chr4 (416-498)||(12799811-12799891)
chr4 (406-500)||(43769798-43769890)
chr4 (419-500)||(47099120-47099199)
chr4 (417-502)||(56271458-56271541)
chr4 (442-502)||(28657331-28657390)
chr4 (466-502)||(38715393-38715429)
chr4 (448-500)||(40609742-40609794)
chr4 (402-500)||(51887746-51887841)
chr4 (399-499)||(52846122-52846220)
chr4 (442-502)||(53647314-53647374)
[»] chr3 (13 HSPs)
chr3 (400-495)||(46139701-46139794)
chr3 (416-502)||(21196221-21196305)
chr3 (402-500)||(36412206-36412303)
chr3 (404-500)||(46852024-46852118)
chr3 (437-500)||(3953367-3953429)
chr3 (417-500)||(39697114-39697195)
chr3 (402-500)||(6999253-6999349)
chr3 (434-500)||(37927096-37927162)
chr3 (402-500)||(51465806-51465902)
chr3 (435-500)||(52937298-52937362)
chr3 (433-501)||(8846604-8846672)
chr3 (402-500)||(26672481-26672575)
chr3 (442-500)||(46253744-46253799)
[»] scaffold0532 (1 HSPs)
scaffold0532 (402-500)||(11047-11143)
[»] chr7 (20 HSPs)
chr7 (402-502)||(35452462-35452561)
chr7 (437-500)||(42555681-42555743)
chr7 (417-500)||(43573435-43573516)
chr7 (402-497)||(46532585-46532679)
chr7 (9-75)||(757935-758001)
chr7 (402-500)||(4713656-4713753)
chr7 (435-493)||(16980411-16980468)
chr7 (399-500)||(34757362-34757462)
chr7 (402-502)||(35588781-35588879)
chr7 (402-501)||(3062413-3062510)
chr7 (448-499)||(10700079-10700129)
chr7 (437-500)||(11352866-11352928)
chr7 (435-502)||(21822489-21822555)
chr7 (10-61)||(29152482-29152532)
chr7 (444-499)||(39110987-39111041)
chr7 (437-500)||(41894032-41894094)
chr7 (417-496)||(44184455-44184532)
chr7 (402-500)||(7817719-7817815)
chr7 (402-496)||(33180606-33180698)
chr7 (402-496)||(44304006-44304099)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 9e-93; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 7104253 - 7103999
Alignment:
Q  8 agagatgaatattacatgttgtatgaaggagatgaagaaatttaatatttttgataagaaaatgataattattgcaagaataaagacgaagnnnnnnn-g 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||        |    
T  7104253 agagatgaatattacatgttgcatgaaggagatgaagaaatttaatatttttgataagaaaat--taattattgcaagaataaagacaaagaaaaaaaag 7104156  T
Q  107 atttttctattataaggataacctaccccaatttatcaagaaaataatttagaaaagataataattttgagctagactagtaaacttcccgtgtctgtct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104155 atttttctattataaggataacctaccccaatttatcaagaaaataacttagaaaagataataattttgagctagactagtaaacttcccgtgtctgtct 7104056  T
Q  207 gttccaccgg---------aaaagttaaaactactagtacatctatctaacggtgaa 254  Q
    ||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  7104055 gttccaccggaaatttattaaaagttaaaactactagtacatctatctaacggtgaa 7103999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 416 - 568
Target Start/End: Complemental strand, 7101662 - 7101511
Alignment:
Q  416 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttcnnnnnnnnaatgt 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||          |||||    
T  7101662 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatc-aaatggttgttcaaataacactcatcttttttaatgt 7101564  T
Q  516 aatcaccaatatttcttttgaaacagtcaaaacaataaataatactattaaat 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101563 aatcaccaatatttcttttgaaacagtcaaaacaataaataatactattaaat 7101511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 7102973 - 7102883
Alignment:
Q  250 gtgaataagtggtgcaagacctaccacaattttgctgcagattgaccaaccactttgacaactttctagcattacattcactcatatttta 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7102973 gtgaataagtggtgcaagacctaccacaattttgctgcagattgaccaaccactttaacaactttctagcattacattcactcatatttta 7102883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 7104348 - 7104290
Alignment:
Q  8 agagatgaatattacatgttgtatgaaggagatgaagaaatttaatatttttgataaga 66  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  7104348 agagatgaatattacatgttgaatgaaggagatgaagaaatttaatattcttgataaga 7104290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 7587486 - 7587561
Alignment:
Q  262 tgcaagacctaccacaattttgctgcagattgaccaaccactttgacaactttctagcat--tacattcactcata 335  Q
    ||||||||||||||||||||||||||| |||||||||| |||||  |||||||||| |||  ||||||||||||||    
T  7587486 tgcaagacctaccacaattttgctgcacattgaccaactactttaccaactttctaacattatacattcactcata 7587561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 15321124 - 15321060
Alignment:
Q  8 agagatgaatattacatgttgtatgaaggagatgaagaaatttaatatttttgataagaaaatga 72  Q
    ||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||||||    
T  15321124 agagatgaagattacatgttgaatgaaggatatgaaaaaatttaatgtttttgagaagaaaatga 15321060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 29147862 - 29147765
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| ||  ||| |||||||||| |||| ||||||||||||||||||| ||||| |  || || |||| |||| |||||||||||||||||||    
T  29147862 tctctattgttttggtttccgtgcaaata-tttacttttcctttgtaaattatggttgtcacataaattatcaaccaaattgattgttcaaataacact 29147765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 502
Target Start/End: Original strand, 45417855 - 45417953
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||||| || |||||||||||||||| | |||||| |||| ||||||||| ||||| |  |||||||||||| ||||| ||||||||| || ||||    
T  45417855 tctctattgttttgattttcgtgcaaatacat-attttttctttataaattatggttgtcacataagttgtcaatc-aaatggttgttcaaagaagactt 45417952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 500
Target Start/End: Complemental strand, 50882084 - 50882002
Alignment:
Q  416 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||||||  |||||| |||| ||||||||||||||| |  || ||||||||| ||||| ||||||||||||||||    
T  50882084 attttcgtgcaaatactc-attttttctttataaattatgattgtcacataaattgtcaatc-aaatggttgttcaaataacact 50882002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 8447819 - 8447915
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| ||| |||| ||||||||| |  | |||| |||||||||||||||||||| |  ||||| |||| | ||||||||||||||||||||||    
T  8447819 tctctattgttttagtttttgtgcaaata-tcaactttttctttgtaaattatgattgtcacataagttatcaa-ctaaatgattgttcaaataacact 8447915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 45967843 - 45967885
Alignment:
Q  33 aaggagatgaagaaatttaatatttttgataagaaaatgataa 75  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  45967843 aaggagatgaagaaatttaatatttttgaaatgaaaatgataa 45967885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 47215718 - 47215621
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| ||| ||| ||||||||||| | |||||| |||| ||||||||| ||||| | |||||| |||| |||| |  ||||||||||||||||    
T  47215718 tctctattgttttagtttccgtgcaaatacat-attttttctttataaattatggttgtcacaaaagttatcaaccaaattagttgttcaaataacact 47215621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 49241491 - 49241400
Alignment:
Q  404 tctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||| |||  ||||||||||||||| | | ||||| ||||||||||||||||||||| |||   ||||||| ||||| ||||||||||||||||    
T  49241491 tctattgcattggttttcgtgcaaatacct-acttttcttttgtaaattatgattgtctcaaaa---gtcaatc-aaatggttgttcaaataacact 49241400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 6143781 - 6143860
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    ||||||||||||||| |  |||||| ||||||||||||| ||||||  || |||||||| | ||||||||||||||||||||    
T  6143781 ttttcgtgcaaatacctactttttc-tttgtaaattatggttgtcttaaatgttgtcaa-ccaaatgattgttcaaataaca 6143860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 50328095 - 50328033
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  50328095 tttttctttgtaaattatggttgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 50328033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 52714855 - 52714793
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||  ||||| | ||||||||||||| ||||| ||||||||||||||||    
T  52714855 tttttctttgtaaattattgttgtcccaaaagttgtcaatc-aaatggttgttcaaataacact 52714793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 32915060 - 32914964
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| ||  |||||||||||||||    |||||| ||||||||||||||||||  | ||||||||||| | ||||  ||||||||||||||||    
T  32915060 tctctattgttttggttttcgtgcaaataccaactttttc-tttgtaaattatgattgttccaaaagttgtcaa-ccaaatagttgttcaaataacact 32914964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 44294098 - 44294175
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaa 480  Q
    |||| ||||| || ||||||||||||||| || |||||| |||| ||||||||  ||||| | ||||||||||||||||    
T  44294098 tctcaattgttttgattttcgtgcaaata-ttaattttttctttataaattatagttgtcccaaaagttgtcaatcaaa 44294175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 45383957 - 45383861
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||| | || ||||||||||||||| | ||||||| ||||||||||||||||| | ||  ||||| |||| | ||||| ||||||||| ||||||    
T  45383957 tctctattattttgattttcgtgcaaata-tatattttttctttgtaaattatgattatttcataagttatcaa-ctaaatggttgttcaaacaacact 45383861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 500
Target Start/End: Complemental strand, 33358132 - 33358050
Alignment:
Q  416 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||||||||||    |||||| ||||||||||||| ||||| |  |||||||||| | ||||| ||||||||||||||||    
T  33358132 attttcgtgcaaatacccactttttc-tttgtaaattatggttgtcacataagttgtcaa-ccaaatggttgttcaaataacact 33358050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 402 - 498
Target Start/End: Original strand, 43397655 - 43397750
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    |||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||    
T  43397655 tctctaatgcattgatttttgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaa-ccaaatagttgttcaaataaca 43397750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 31597065 - 31597127
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||    
T  31597065 tttttctttgtaaattatgattgtctcaaaagttatcaatc-aaatggttgttcaaataacact 31597127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 29440511 - 29440414
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| || |||| |||||||||||||  |||||| | | ||||||||| ||||| |  || |||||||||||| |||||||||||||||||||    
T  29440511 tctctattgttttgatttccgtgcaaatacttactttttc-tgtataaattatggttgtcacgtaaattgtcaatcaaattgattgttcaaataacact 29440414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 34695899 - 34695821
Alignment:
Q  21 acatgttgtatgaaggagatgaagaaatttaatatttttgataagaaaatgataa-ttattgcaagaataaagacgaag 98  Q
    |||||||| ||||||||| ||||||||||| ||| |||||| ||||||||||||| | |||| ||||||||||| ||||    
T  34695899 acatgttgaatgaaggaggtgaagaaatttgataattttgaaaagaaaatgataactgattgtaagaataaagatgaag 34695821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 502
Target Start/End: Complemental strand, 38708283 - 38708184
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||| ||||| || |||| |||||||||| | ||||||| ||||| |||||||| ||||| |  || |||||||||||| || |||||||||||||||||    
T  38708283 tctccattgttttgatttccgtgcaaata-tctattttttctttgcaaattatggttgtcacataaattgtcaatcaaattggttgttcaaataacactt 38708185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 30439494 - 30439398
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || |||||||||||||||||  |||||| |||||||||||||| ||||| |  ||||| |||| | ||||| ||||||||||||||||    
T  30439494 tctctattgctttgattttcgtgcaaatactc-attttttctttgtaaattatggttgtcacataagttatcaa-ccaaatggttgttcaaataacact 30439398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 32166627 - 32166696
Alignment:
Q  8 agagatgaatattacatgttgtatgaaggagatgaagaaatttaatatttttgataagaaaatgataatt 77  Q
    ||||||||| ||||||||||| || |||||||||||||| ||| || || |||| | |||||||||||||    
T  32166627 agagatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataatt 32166696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 480
Target Start/End: Complemental strand, 9549156 - 9549110
Alignment:
Q  434 tatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaa 480  Q
    |||||||||||||||||||||| ||||||  ||||||||||| ||||    
T  9549156 tatttttcctttgtaaattatggttgtctaaaaagttgtcaaccaaa 9549110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 496
Target Start/End: Original strand, 20174767 - 20174860
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataa 496  Q
    |||||||||| || |||||||| ||||||||| |||||| || ||||||||||  |||||    ||||||||||||||| ||||| || ||||||    
T  20174767 tctctattgttttgattttcgtacaaatactt-attttttctctgtaaattatagttgtcatataagttgtcaatcaaattgattcttgaaataa 20174860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 496
Target Start/End: Original strand, 20219494 - 20219587
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataa 496  Q
    |||||||||| || |||||||| ||||||||| |||||| || ||||||||||  |||||    ||||||||||||||| ||||| || ||||||    
T  20219494 tctctattgttttgattttcgtacaaatactt-attttttctctgtaaattatagttgtcatataagttgtcaatcaaattgattcttgaaataa 20219587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 496
Target Start/End: Complemental strand, 36424590 - 36424497
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataa 496  Q
    |||||||||| ||  ||| ||||||||||| | |||||| |||| ||||||||| ||||| | |||||| ||||||||| |  ||||||||||||    
T  36424590 tctctattgttttggtttccgtgcaaatacat-attttttctttataaattatggttgtcacaaaagttatcaatcaaattagttgttcaaataa 36424497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 500
Target Start/End: Original strand, 39211163 - 39211221
Alignment:
Q  442 ctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||| |||  |||||||||  ||||||||||  |||||||||||||||||||||||    
T  39211163 ctttgtatatttagattgtctcacaagttgtcaacaaaaatgattgttcaaataacact 39211221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 502
Target Start/End: Complemental strand, 16327125 - 16327041
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    ||||| |||||||||  ||||||| |||||||||||||  ||||  | ||| || | |||| ||||||||||||||||||||||||    
T  16327125 ttttcttgcaaatacactattttttctttgtaaattatagttgttccaaaaattattaatc-aaatgattgttcaaataacacttc 16327041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 461
Target Start/End: Complemental strand, 39543492 - 39543453
Alignment:
Q  421 cgtgcaaatactttatttttcctttgtaaattatgattgtc 461  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  39543492 cgtgcaaatactt-attttttctttgtaaattatgattgtc 39543453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 499
Target Start/End: Original strand, 31749448 - 31749543
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacac 499  Q
    |||||||||| |||||||||||| ||||| | ||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  31749448 tctctattgttttaattttcgtgtaaata-tctattttttctttgtaaattatggttgtctcttaagttgtcaatc-aaatgattgttcaaataacac 31749543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 35213515 - 35213453
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||    
T  35213515 tttttctttgtaaattatgattgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 35213453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 1369443 - 1369539
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || ||||||||||||||||    |||||| ||||||||||||| ||||||| ||| ||||||| | ||||| ||||||||||||||||    
T  1369443 tctctattgctttgattttcgtgcaaataccaactttttc-tttgtaaattatggttgtctcaaaaattgtcaa-ccaaatggttgttcaaataacact 1369539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 13143370 - 13143274
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || ||||||||||||||||    |||||| ||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  13143370 tctctattgctttgattttcgtgcaaatacaaactttttc-tttgtaaattatggttgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 13143274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 2689019 - 2688958
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    |||| |||| ||||||||| ||||| | ||||||||||| |||| |||||||||||||||||    
T  2689019 tttttctttataaattatggttgtcacaaaagttgtcaaccaaattgattgttcaaataaca 2688958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 502
Target Start/End: Original strand, 26832729 - 26832827
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||||| ||  ||||||||||||||| |  |||||| || |||||||||| ||||| |  |||||||||||| ||||| |||||||||||| ||||    
T  26832729 tctctattgttttggttttcgtgcaaatacatagtttttc-ttcgtaaattatggttgtcacataagttgtcaatc-aaatggttgttcaaataagactt 26832826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 32459470 - 32459408
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||| |||||   |||||||||||||||| || ||||||||||||||||    
T  32459470 tttttctttgtaaattatggttgtcctaaaagttgtcaatcaaattg-ttgttcaaataacact 32459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 500
Target Start/End: Original strand, 3832585 - 3832642
Alignment:
Q  442 ctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||| ||||| |  |||||||||||| ||||| ||||||||||||||||    
T  3832585 ctttgtaaattatggttgtcccataagttgtcaatc-aaatggttgttcaaataacact 3832642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 499
Target Start/End: Original strand, 6271464 - 6271525
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacac 499  Q
    |||| |||||||||||||||| || || ||||||||| || |||||| |||||||||||||||    
T  6271464 tttttctttgtaaattatgatcgtatcaaaagttgtc-attaaaatggttgttcaaataacac 6271525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 500
Target Start/End: Complemental strand, 18141250 - 18141193
Alignment:
Q  442 ctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  18141250 ctttgtaaattatggttgtcacaaaagttgtcaa-ccaaatggttgttcaaataacact 18141193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 9226383 - 9226480
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| || |||| |||||||||||||  |||||| |||||||||||| |||||| | ||||||||||| |||| || ||||||||||||||||    
T  9226383 tctctattgttttgatttccgtgcaaatacttactttttc-tttgtaaattataattgtcacaaaagttgtcaaccaaattggttgttcaaataacact 9226480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 500
Target Start/End: Original strand, 34270425 - 34270506
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||||||||| | | ||||||||||||||||||| ||||||| ||| ||||||| | ||||| ||||||||||||||||    
T  34270425 ttttcgtgcaaatacct-acttttcctttgtaaattatggttgtctcaaaatttgtcaa-ccaaatggttgttcaaataacact 34270506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 502
Target Start/End: Complemental strand, 15008538 - 15008440
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||||| ||  |||||||||||||| | || ||||| |||||||||||| |||||| |  |||||||||| |||| | ||||||||||||||||||    
T  15008538 tctctattgttttggttttcgtgcaaata-tctacttttcttttgtaaattattattgtcacataagttgtcaaccaaa-taattgttcaaataacactt 15008441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 189657 - 189595
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||| ||||||||||||||| | ||||||||||| | ||||||||||||||||||||||    
T  189657 tttttctttataaattatgattgtcccaaaagttgtcaa-ccaaatgattgttcaaataacact 189595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 501
Target Start/End: Complemental strand, 34888797 - 34888699
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||||| || |||| ||| ||||||| | ||| ||| ||| |||||||||||| || | |||||||||||  ||| ||||||||||||||||||||    
T  34888797 tctctattgttttgatttccgtacaaatacataattattc-tttataaattatgattttcacaaaagttgtcaactaaattgattgttcaaataacactt 34888699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 500
Target Start/End: Original strand, 43441836 - 43441917
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||||   |||||| |||||||||||||| ||||||  ||||||||||| | ||||| ||||||||||||||||    
T  43441836 ttttcgtgcaaatacca-attttttctttgtaaattatggttgtcttaaaagttgtcaa-ccaaatggttgttcaaataacact 43441917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 973193 - 973127
Alignment:
Q  9 gagatgaatattacatgttgtatgaaggagatgaagaaatttaatatttttgataagaaaatgataa 75  Q
    |||||||| || |||||||| || ||||||||||||||||||||| ||||||| |  ||||||||||    
T  973193 gagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataa 973127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 8675421 - 8675325
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || ||||||||||||||||    |||||| ||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  8675421 tctctattgctttgattttcgtgcaaataccaactttttc-tttgtaaattatggttgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 8675325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 502
Target Start/End: Complemental strand, 38704171 - 38704087
Alignment:
Q  416 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    ||||||||||||||||    |||||| ||||||||||||| ||||| | |||||||| |||| ||||| ||||||||||||||||||    
T  38704171 attttcgtgcaaataccaactttttc-tttgtaaattatggttgtcccaaaagttgttaatc-aaatggttgttcaaataacacttc 38704087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 10649552 - 10649614
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  10649552 tttttctttgtaaattatggttgtcacaaaagttgtcaa-ccaaatggttgttcaaataacact 10649614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 32912155 - 32912217
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||| ||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||    
T  32912155 tttttctttataaattatgattgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 32912217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 15953033 - 15952937
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || ||||||||||||||||    |||||| ||||||||||||| ||||| |  |||||||||| | ||||| ||||||||||||||||    
T  15953033 tctctattgctttgattttcgtgcaaatacccactttttc-tttgtaaattatggttgtcacataagttgtcaa-ccaaatggttgttcaaataacact 15952937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 31955247 - 31955316
Alignment:
Q  432 tttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    ||||||||| ||||||||| ||||||||||    |||||||||| | ||||||||||| ||||||||||||    
T  31955247 tttattttttctttgtaaaatatgattgtcatgtaagttgtcaa-ctaaatgattgtttaaataacacttc 31955316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 500
Target Start/End: Original strand, 41724303 - 41724369
Alignment:
Q  434 tatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||| ||||||||||||||||| || |  || |||||||||||| || ||||||| ||||||||    
T  41724303 tattttttctttgtaaattatgattatcacataaattgtcaatcaaattggttgttcagataacact 41724369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 7113610 - 7113675
Alignment:
Q  12 atgaatattacatgttgtatgaaggagatgaagaaatttaatatttttgataagaaaatgataatt 77  Q
    ||||| || ||| |||| ||||| ||||||||||| ||||||||| |||| | |||||||||||||    
T  7113610 atgaaaatcacacgttgaatgaatgagatgaagaagtttaatattcttgagatgaaaatgataatt 7113675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 500
Target Start/End: Complemental strand, 22525987 - 22525888
Alignment:
Q  399 ttatctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    ||||||||||||  || |||||||||||||| | |  |||||| ||||||||||||| ||||||| |||||| |||||| ||||| ||||||||||||||    
T  22525987 ttatctctattgctttgattttcgtgcaaatgcctactttttc-tttgtaaattatggttgtctcaaaagttatcaatc-aaatggttgttcaaataaca 22525890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 502
Target Start/End: Complemental strand, 14233692 - 14233608
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||| ||||||||| || | |||| |||||||||||||| ||||||   |||||||||| ||||||| ||||||||||||||||||    
T  14233692 tttttgtgcaaatatttaactttttctttgtaaattatggttgtcttgtaagttgtcaa-caaaatggttgttcaaataacacttc 14233608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 501
Target Start/End: Original strand, 16677750 - 16677853
Alignment:
Q  399 ttatctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatg---attgtctctaaagttgtcaatcaaaatgattgttcaaata 495  Q
    ||||||||||||  ||  |||||||||||||| || |||||| |||| |||||||||   ||||| || ||||||||||| |||| ||||||||||||||    
T  16677750 ttatctctattgctttggttttcgtgcaaata-ttaattttttctttataaattatggtaattgtttcaaaagttgtcaaccaaa-tgattgttcaaata 16677847  T
Q  496 acactt 501  Q
    ||||||    
T  16677848 acactt 16677853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 34119640 - 34119544
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| || |||||||||  |||||||  |||||| |||||||||||||| ||||||  |||||||||| | ||||| |||||||||| |||||    
T  34119640 tctctattgttttgattttcgtgtgaatacttactttttc-tttgtaaattatgagtgtctcataagttgtcaa-ccaaatggttgttcaaattacact 34119544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 9377554 - 9377633
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    |||||||||||||| | || |||| ||||||||||||||| ||||||  |||||||||| | ||||| ||||||||||||||    
T  9377554 ttttcgtgcaaata-tctactttttctttgtaaattatgactgtctcataagttgtcaa-ctaaatggttgttcaaataaca 9377633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 500
Target Start/End: Complemental strand, 23352898 - 23352799
Alignment:
Q  399 ttatctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    ||||||||||||  ||  ||||||||||||||| |  |||||| ||||||||||||| ||||| |  |||||||||| | ||||| ||||||||||||||    
T  23352898 ttatctctattgctttggttttcgtgcaaatacatactttttc-tttgtaaattatggttgtcccataagttgtcaa-ccaaatggttgttcaaataaca 23352801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 502
Target Start/End: Original strand, 28245826 - 28245908
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    ||||||||||||||| | ||||||| ||||||||||| | |||| || ||||||||||| | ||||| ||||||||||||||||||    
T  28245826 ttttcgtgcaaatacct-atttttc-tttgtaaattaaggttgtttcaaaagttgtcaa-ccaaatggttgttcaaataacacttc 28245908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 500
Target Start/End: Original strand, 2563789 - 2563883
Alignment:
Q  404 tctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||| ||  |||||||||||||||    |||||| ||| |||||||||||||||   ||||||||||| |||| |||||||||||||||||||    
T  2563789 tctattgttttggttttcgtgcaaataccaactttttc-tttataaattatgattgtcctaaaagttgtcaaccaaa-tgattgttcaaataacact 2563883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 7648473 - 7648569
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| ||  |||| ||||||||||||  ||||  |||||||||||||||||||  |  ||||| |||| |||| || ||||||||||||||||    
T  7648473 tctctattgttttggtttttgtgcaaatacttcttttt--ctttgtaaattatgattgttgcataagttatcaaccaaattggttgttcaaataacact 7648569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 500
Target Start/End: Original strand, 10711822 - 10711903
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||| |||||| | |||||| ||||||||||||||||||| || |||||| |||| | ||||  ||||||||||||||||    
T  10711822 ttttcgtgtaaatacct-attttttctttgtaaattatgattgtttcaaaagttatcaa-ccaaatagttgttcaaataacact 10711903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 500
Target Start/End: Original strand, 32869924 - 32870005
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||||   |||||| |||||||||||||| ||||| | ||| ||||||| | ||||| ||||||||||||||||    
T  32869924 ttttcgtgcaaatacca-attttttctttgtaaattatggttgtcccaaaaattgtcaa-ccaaatggttgttcaaataacact 32870005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 36517313 - 36517375
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||||||||| | |||||| |||||| ||||  ||||||||||||||||    
T  36517313 tttttctttgtaaattatgattgtcccaaaagttatcaatc-aaatagttgttcaaataacact 36517375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 42678851 - 42678929
Alignment:
Q  421 cgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||||| |  ||||| |||||||||||||| ||||| | ||| ||||||| |||  |||||||||||||||||||    
T  42678851 cgtgcaaatacctacttttttctttgtaaattatggttgtcac-aaaattgtcaaccaatttgattgttcaaataacact 42678929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 502
Target Start/End: Complemental strand, 15245713 - 15245650
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||| ||||||||||||||||||||||  ||||||||||   ||||  ||||||||||||||||||    
T  15245713 tttttctttgtaaattatgattgtctcataagttgtcaa--gaaattgttgttcaaataacacttc 15245650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 502
Target Start/End: Complemental strand, 9634390 - 9634326
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||| |||||||||||||| ||||    ||||||||||| |||| |||||||||||||||||||||    
T  9634390 tttttctttgtaaattatggttgttcaaaaagttgtcaaccaaa-tgattgttcaaataacacttc 9634326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 11384969 - 11384908
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    |||| ||||||||| |||||||||| |  |||||||||| |||| || ||||||||||||||    
T  11384969 tttttctttgtaaaatatgattgtcacgtaagttgtcaaccaaattggttgttcaaataaca 11384908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 500
Target Start/End: Original strand, 13765523 - 13765579
Alignment:
Q  443 tttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  13765523 tttgtaaattatggttgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 13765579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 502
Target Start/End: Complemental strand, 41586642 - 41586558
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||||||||||||||||  |||||  || |||||||||| ||||  |  |||||||||| | ||||| ||||||||||||||||||    
T  41586642 ttttcgtgcaaatacttactttttttttggtaaattatggttgttccataagttgtcaa-ctaaatggttgttcaaataacacttc 41586558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 31415038 - 31415085
Alignment:
Q  448 aaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataa 496  Q
    |||||||| ||||||| |||||| ||||| |||||||||||||||||||    
T  31415038 aaattatggttgtctcaaaagttatcaat-aaaatgattgttcaaataa 31415085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 500
Target Start/End: Complemental strand, 36212034 - 36211952
Alignment:
Q  416 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||||||||| |||| |||| |||| ||||||||||||||| |  || || |||| |||| || ||||||||||||||||    
T  36212034 attttcgtgcaaata-tttactttttctttataaattatgattgtcacataatttatcaaccaaa-tggttgttcaaataacact 36211952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 500
Target Start/End: Complemental strand, 39344953 - 39344872
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||||   |||||| |||||||||||||||||||||| |||||| |||| | ||||| ||||||||||||||||    
T  39344953 ttttcgtgcaaatacca-attttttctttgtaaattatgattgtctcaaaagttatcaa-ccaaatggttgttcaaataacact 39344872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 502
Target Start/End: Complemental strand, 18882963 - 18882865
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||||  || |||||||| ||||||| | |||||| ||||||||||||||||| |  | ||||||||||| | ||||| |||||||||||||||||    
T  18882963 tctctattgctttgattttcgtacaaatacct-attttttctttgtaaattatgatttttccaaaagttgtcaa-ccaaatggttgttcaaataacactt 18882866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 496
Target Start/End: Original strand, 33860729 - 33860822
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataa 496  Q
    |||||||||| ||  ||| |||||||||||||  |||||| ||||||||||||  ||||| |  ||||||||||||||| || ||||||||||||    
T  33860729 tctctattgttttggtttccgtgcaaatacttactttttc-tttgtaaattatcgttgtcacgtaagttgtcaatcaaattggttgttcaaataa 33860822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 500
Target Start/End: Original strand, 22819746 - 22819828
Alignment:
Q  416 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||||||||||    |||||| ||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  22819746 attttcgtgcaaataccaactttttc-tttgtaaattatggttgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 22819828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 17683458 - 17683520
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  17683458 tttttctttgtaaattatggttgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 17683520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 12799811 - 12799891
Alignment:
Q  416 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    ||||||||| |||||| | |||||| |||||||||||||||||||| |  ||||||| || | ||||| ||||||||||||||    
T  12799811 attttcgtgtaaatacct-attttttctttgtaaattatgattgtcacataagttgttaa-ccaaatggttgttcaaataaca 12799891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 500
Target Start/End: Original strand, 43769798 - 43769890
Alignment:
Q  406 tattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||| |||||||||||||||||||   | |||| |||||||||||||| ||||| |  ||||| |||| ||||||  ||||||||||||||||    
T  43769798 tattgttttaattttcgtgcaaatac-ccactttttctttgtaaattatggttgtcgcataagttatcaa-caaaatagttgttcaaataacact 43769890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 500
Target Start/End: Original strand, 47099120 - 47099199
Alignment:
Q  419 ttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||||||||  || ||| |||||||||||||| ||||| | |||||| |||| | ||||| ||||||||||||||||    
T  47099120 ttcgtgcaaatacta-atattttctttgtaaattatggttgtcccaaaagttatcaa-ccaaatggttgttcaaataacact 47099199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 502
Target Start/End: Original strand, 56271458 - 56271541
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    ||||||||||||||| |  |||||| ||||||||||||| |||||   ||||||||||| | |||||  |||||||||||||||||    
T  56271458 ttttcgtgcaaatacctactttttc-tttgtaaattatggttgtcataaaagttgtcaaac-aaatggatgttcaaataacacttc 56271541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 502
Target Start/End: Complemental strand, 28657390 - 28657331
Alignment:
Q  442 ctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||||||||||||| ||||| | ||||||||||| |||| |  ||||||||||||||||||    
T  28657390 ctttgtaaattatggttgtcac-aaagttgtcaaccaaattcgttgttcaaataacacttc 28657331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Original strand, 38715393 - 38715429
Alignment:
Q  466 aagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||||||||| |||| |||||||||||||||||||||    
T  38715393 aagttgtcaaccaaattgattgttcaaataacacttc 38715429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 500
Target Start/End: Original strand, 40609742 - 40609794
Alignment:
Q  448 aaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||| ||||| | ||||||||||| |||| || ||||||||||||||||    
T  40609742 aaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaataacact 40609794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 51887746 - 51887841
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctcta-aagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| || ||||||||||||||||  |||| || ||||| |||||||| ||||| ||| ||||||||||| |||  | ||||||||||||||||    
T  51887746 tctctattgttttgattttcgtgcaaatac-atattctttctttgcaaattatggttgtc-ctataagttgtcaattaaa--ggttgttcaaataacact 51887841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 499
Target Start/End: Complemental strand, 52846220 - 52846122
Alignment:
Q  399 ttatctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    ||||||||||||  ||  |||||||||||||||    |||||| |||||||||||||||||||   ||| ||||||||| ||||  ||||||||||||||    
T  52846220 ttatctctattgctttggttttcgtgcaaatacaaactttttc-tttgtaaattatgattgtcctaaaaattgtcaatc-aaatagttgttcaaataaca 52846123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 502
Target Start/End: Complemental strand, 53647374 - 53647314
Alignment:
Q  442 ctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||| ||||||||| ||||| |  |||||||||| |||| |||||||||||||| ||||||    
T  53647374 ctttataaattatggttgtcacataagttgtcaaccaaattgattgttcaaatatcacttc 53647314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 46139794 - 46139701
Alignment:
Q  400 tatctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaata 495  Q
    |||||||||||| || |||||||||||||||| |||| ||   |||||||||||||||| |||  ||||||||||| | |||||||||||||||||    
T  46139794 tatctctattgttttgattttcgtgcaaatac-ttatgttctttttgtaaattatgattatcttaaaagttgtcaa-ccaaatgattgttcaaata 46139701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 502
Target Start/End: Original strand, 21196221 - 21196305
Alignment:
Q  416 attttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||||||||||||||| | |||||| ||||||||||||||||| || |  || ||||||||| ||||| ||||||||||||||||||    
T  21196221 attttcgtgcaaatacat-attttttctttgtaaattatgattatcccataaattgtcaatc-aaatggttgttcaaataacacttc 21196305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 36412206 - 36412303
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || |||||||||||||||| | ||| || |||||||||||||| ||||| |  |||||||||| | ||||| ||||||||||||||||    
T  36412206 tctctattgctttgattttcgtgcaaatacat-attctttctttgtaaattatggttgtcccataagttgtcaaaccaaatggttgttcaaataacact 36412303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 46852118 - 46852024
Alignment:
Q  404 tctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||| ||  |||||||||||||| |  | |||| |||||||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||    
T  46852118 tctattgttttggttttcgtgcaaata-tcaactttttctttgtaaattatgattgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 46852024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 3953429 - 3953367
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||| ||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  3953429 tttttctttataaattatgattgtctcaaaaattgtcaa-ccaaatgattgttcaaataacact 3953367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 500
Target Start/End: Complemental strand, 39697195 - 39697114
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||| |  |||||| |||||||||||||| ||||| | ||||||||||||| ||||  ||||||||||||||||    
T  39697195 ttttcgtgcaaata-tcaattttttctttgtaaattatggttgtcccaaaagttgtcaatc-aaatagttgttcaaataacact 39697114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 6999253 - 6999349
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || |||||||||||||||| | |||||| | |||||||||||| ||||| |  |||||||||| | ||||| ||||||||||||||||    
T  6999253 tctctattgctttgattttcgtgcaaatacat-attttttcattgtaaattatggttgtcccataagttgtcaa-ccaaatggttgttcaaataacact 6999349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 37927162 - 37927096
Alignment:
Q  434 tatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||| |||| ||||||||| ||||| |  ||||||||||||||| || ||||||||||||||||    
T  37927162 tattttttctttataaattatggttgtcacacaagttgtcaatcaaattggttgttcaaataacact 37927096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 51465902 - 51465806
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || ||||||||||||||||    |||||| ||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  51465902 tctctattgctttgattttcgtgcaaataccaactttttc-tttgtaaattatggttgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 51465806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 52937298 - 52937362
Alignment:
Q  435 atttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||| |||||||||||||| ||||||| ||| || |||| | ||||| ||||||||||||||||    
T  52937298 attttttctttgtaaattatggttgtctcaaaaattatcaa-ccaaatggttgttcaaataacact 52937362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 501
Target Start/End: Original strand, 8846604 - 8846672
Alignment:
Q  433 ttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||| |||| |||||||||||| ||    |||||||||| |||| |||||||| |||||||||||    
T  8846604 ttattttttctttataaattatgattatcatataagttgtcaaccaaattgattgttgaaataacactt 8846672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 26672481 - 26672575
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| || ||||  ||||||||||||  |||||| ||||||||||||| ||||| |   | ||||||| |||| | |||||||||||||||||    
T  26672481 tctctattgttttgatttctgtgcaaatacttactttttc-tttgtaaattatggttgtcac---atttgtcaaccaaattaattgttcaaataacact 26672575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 500
Target Start/End: Original strand, 46253744 - 46253799
Alignment:
Q  442 ctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||| ||||| | |||||||||||||   ||| ||||||||||||||||    
T  46253744 ctttgtaaattatggttgtcccaaaagttgtcaatc---atggttgttcaaataacact 46253799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 11047 - 11143
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| || ||||||||||||||||    |||||| ||||||||||||||||||| |  |||||||||| ||||| | ||||||||||||||||    
T  11047 tctctattgttttgattttcgtgcaaatacccactttttc-tttgtaaattatgattgtcacataagttgtcaaccaaaa-ggttgttcaaataacact 11143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 502
Target Start/End: Complemental strand, 35452561 - 35452462
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||||  || |||| ||||||||||| || |||||| ||| ||||||||| ||||| |  |||||||||| || | ||||||||||||||||||||    
T  35452561 tctctattgctttgatttccgtgcaaataccttctttttc-tttataaattatggttgtcacacaagttgtcaaccagattgattgttcaaataacactt 35452463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 42555681 - 42555743
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||| ||||||||| ||||||| ||||||||||| | ||||| ||||||||||||||||    
T  42555681 ttttcctttataaattatggttgtctcaaaagttgtcaa-ccaaatggttgttcaaataacact 42555743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 500
Target Start/End: Complemental strand, 43573516 - 43573435
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||||||||   |||||| |||| ||||||||| ||||||| ||| ||||||| |||| |||||||||||||||||||    
T  43573516 ttttcgtgcaaatacca-attttttctttataaattatggttgtctcaaaaattgtcaaccaaa-tgattgttcaaataacact 43573435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 497
Target Start/End: Original strand, 46532585 - 46532679
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataac 497  Q
    |||||||||| ||  |||||||| |||||| | ||||||| ||| ||||||||| ||||| | ||||||||||| |||| || |||||||||||||    
T  46532585 tctctattgttttggttttcgtgtaaatacctaatttttc-tttataaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaataac 46532679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 757935 - 758001
Alignment:
Q  9 gagatgaatattacatgttgtatgaaggagatgaagaaatttaatatttttgataagaaaatgataa 75  Q
    |||||||| || |||||||| ||||||||||| || |||||||| |||||||| | |||||||||||    
T  757935 gagatgaagatcacatgttgaatgaaggagataaataaatttaagatttttgagatgaaaatgataa 758001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 4713656 - 4713753
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||| ||  ||| | ||||||||| ||||||||| ||||||||||||| ||||| |  |||||||||| |||| || || |||||||||||||    
T  4713656 tctctattgtgttggtttccatgcaaataccttatttttc-tttgtaaattatggttgtcacataagttgtcaaccaaattggttattcaaataacact 4713753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 16980411 - 16980468
Alignment:
Q  435 atttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaa 493  Q
    |||||| |||||||||||||||||||||| ||||||||||| | ||||| |||||||||    
T  16980411 attttttctttgtaaattatgattgtctcaaaagttgtcaa-ctaaatggttgttcaaa 16980468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 500
Target Start/End: Complemental strand, 34757462 - 34757362
Alignment:
Q  399 ttatctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataaca 498  Q
    ||||||||||||| ||  |||  |||||||||| |  |||||| ||| ||||||||| ||||| | ||||||||||| |||| || ||||||||||||||    
T  34757462 ttatctctattgttttggtttcagtgcaaatacctactttttc-tttataaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaataaca 34757364  T
Q  499 ct 500  Q
    ||    
T  34757363 ct 34757362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 502
Target Start/End: Complemental strand, 35588879 - 35588781
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||||  || ||||||||||||||||    |||||| |||||||||||| |||||||| ||| || ||||| ||| || |||||||||||||||||    
T  35588879 tctctattgctttgattttcgtgcaaataccaactttttc-tttgtaaattataattgtctcaaaaattatcaattaaa-tggttgttcaaataacactt 35588782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 501
Target Start/End: Original strand, 3062413 - 3062510
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacactt 501  Q
    |||||||||| ||  |||| |||||||||| | |||||| |||||||||||||| |||||    |||||||||| | ||||| |||||||||||||||||    
T  3062413 tctctattgttttggtttttgtgcaaatacct-attttttctttgtaaattatggttgtcatgtaagttgtcaa-ccaaatggttgttcaaataacactt 3062510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 499
Target Start/End: Complemental strand, 10700129 - 10700079
Alignment:
Q  448 aaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacac 499  Q
    |||||||| ||||| | |||||||||||||||| ||||||||||||||||||    
T  10700129 aaattatggttgtcccaaaagttgtcaatcaaa-tgattgttcaaataacac 10700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 11352928 - 11352866
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||| |||||||||||||| ||||| | ||||||||||| | ||||| ||||||||||||||||    
T  11352928 tttttctttgtaaattatggttgtcccaaaagttgtcaa-ccaaatggttgttcaaataacact 11352866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 502
Target Start/End: Complemental strand, 21822555 - 21822489
Alignment:
Q  435 atttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacacttc 502  Q
    |||||| |||||||||||||| |||| |  ||||||||||| | ||||| ||||||||||||||||||    
T  21822555 attttttctttgtaaattatggttgttttaaaagttgtcaa-ctaaatggttgttcaaataacacttc 21822489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 29152482 - 29152532
Alignment:
Q  10 agatgaatattacatgttgtatgaaggagatgaagaaatttaatatttttga 61  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||| |||||||    
T  29152482 agatgaatattacatgttgaatgaagtagatgaa-aaatttaatgtttttga 29152532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 39110987 - 39111041
Alignment:
Q  444 ttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacac 499  Q
    ||||||||||||||||||||  |||||||| || ||||| ||||||||||||||||    
T  39110987 ttgtaaattatgattgtctcataagttgtc-attaaaataattgttcaaataacac 39111041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 41894032 - 41894094
Alignment:
Q  437 ttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    ||||||||||||||||||| ||||| | ||| ||||||| | ||||| ||||||||||||||||    
T  41894032 ttttcctttgtaaattatggttgtcacaaaaattgtcaa-ctaaatggttgttcaaataacact 41894094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 44184532 - 44184455
Alignment:
Q  417 ttttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataa 496  Q
    ||||||||||||||| | |||||| |||||||||||||| ||||  | ||||||||||| | ||||| ||||||||||||    
T  44184532 ttttcgtgcaaatacct-attttttctttgtaaattatggttgttccaaaagttgtcaa-ccaaatggttgttcaaataa 44184455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 7817719 - 7817815
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataacact 500  Q
    |||||||||  || ||||||||||||||| |  | |||| |||||||||||||| ||||| |  |||||||||| | ||||| ||||||||||||||||    
T  7817719 tctctattgctttgattttcgtgcaaata-tccactttttctttgtaaattatggttgtcacataagttgtcaa-ccaaatggttgttcaaataacact 7817815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 496
Target Start/End: Complemental strand, 33180698 - 33180606
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataa 496  Q
    |||||||||| ||  ||||||||||||||| | |||| | |||| |||||||| ||||||||  |||||||||| | ||||| ||||||||||||    
T  33180698 tctctattgttttggttttcgtgcaaatacataatttct-ctttataaattatcattgtctcataagttgtcaa-ccaaatggttgttcaaataa 33180606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 496
Target Start/End: Original strand, 44304006 - 44304099
Alignment:
Q  402 tctctattgtattaattttcgtgcaaatactttatttttcctttgtaaattatgattgtctctaaagttgtcaatcaaaatgattgttcaaataa 496  Q
    |||||||||| || |||||||| ||||||||| |||||| || ||||||||||  |||||    ||||||||||||||| ||||| || ||||||    
T  44304006 tctctattgttttgattttcgtacaaatactt-attttttctctgtaaattatagttgtcatataagttgtcaatcaaattgattcttgaaataa 44304099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University