View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_26 (Length: 567)
Name: NF1740_low_26
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Complemental strand, 38483837 - 38483298
Alignment:
| Q |
16 |
acatcatccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatttccatcgaaaaaactact |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38483837 |
acatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacccgtcttcccaacacgatttccatcgaaaaaactact |
38483738 |
T |
|
| Q |
116 |
cccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatcataatttctccatctcgtatgtggttccgtt |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38483737 |
cccaatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatcataatttctccatcttgtatgtggttccgtt |
38483638 |
T |
|
| Q |
216 |
ccattaccactcctaatctcagcctcaaacttcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaagaacggttcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483637 |
ccattaccactcctaatctcagcctcaaacttcaccattttataaatcggcttcacaacatcgtttaaaaaaccatattgcgaatgaaagaacggttcat |
38483538 |
T |
|
| Q |
316 |
aatcataatgatcattgtttttcttactccgcaagattttatttaaatcatttgccatatgatgaaaaatatagcaaatacattcaggaataaaacgtaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483537 |
aatcataatgatcattgtttttcttactccgcaagattttatttaaatcatttgtcatatgatgaaaaatatagcaaatacattcaggaataaaacgtaa |
38483438 |
T |
|
| Q |
416 |
attcgcagactccccccaaatgagaagataaagagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgagacactt |
515 |
Q |
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||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483437 |
attcgcagattccccccaaataaggagataaagagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgagacactt |
38483338 |
T |
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| Q |
516 |
gacttaacatgcaagtaactgcaccagtaagtgtaattac |
555 |
Q |
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| T |
38483337 |
gacttaacatgcaagtaactgcaccaggaagtgtaattac |
38483298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 3682910 - 3682860
Alignment:
| Q |
147 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccat |
197 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
3682910 |
aaacacctcctactccaaaaatactcatttatatcatcataattcctccat |
3682860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 30118138 - 30118047
Alignment:
| Q |
105 |
aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatcataatttctcca |
196 |
Q |
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|||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
30118138 |
aaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaatactcattaatatcatcataatttctcca |
30118047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 30118239 - 30118163
Alignment:
| Q |
16 |
acatcatccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaaca |
92 |
Q |
| |
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|||| ||||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| |
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| T |
30118239 |
acataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaaca |
30118163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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